from pandas import options
options.display.max_rows = 8

Getting started with

computer aided metabolic engineering and optimization

cameo reuses and extends model data structures defined by cobrapy (COnstraints-Based Reconstruction and Analysis tool for Python). So, in addition to following this quick start guide and other cameo tutorials, we encourage you to explore cobrapy’s documentation as well.

Step 1: Load a model

Loading a model is easy. Just import the load_model function.

from cameo import load_model

For example, load the most current genome-scale metabolic reconstruction of Escherichia coli.

model = load_model("iJO1366")

Models, reactions, metabolites, etc., provide return HTML when evaluated in Jupyter notebooks and can thus be easily inspected.

model

Name	iJO1366
Number of metabolites	1805
Number of reactions	2583
Reactions	4crsol_c --> 5drib_c --> aacald_c --> amob_c --> mththf_c --> oxam_c --> 0.000248 4fe4s_c + 0.024732 pe161_p + 5.5e-05 udcpdp_c + 0.03327 ptrc_c + 0.000223 10fthf_c + 0.000658 mn2_c + 0.000223 gthrd_c + 48.752916 h2o_c + 0.012747 pe181_p + 0.025612 dgtp_c + 0.129799 ctp_c + 0.000674 cu2_c + 0.000116 bmocogdp_c + 0.18569 k_c + 2e-06 btn_c + 0.002288 pg181_c + 0.006388 fe2_c + 0.000223 chor_c + 0.007428 fe3_c + 0.003805 pg161_p + 7e-06 mococdp_c + 0.000223 adocbl_c + 0.012366 pe160_c + 0.000324 zn2_c + 4.5e-05 nadh_c + 0.595297 gly_c + 0.149336 met_dsh_L_c + 7e-06 mobd_c + 0.000168 coa_c + 0.004892 pg160_p + 0.000112 nadp_c + 0.088988 cys_dsh_L_c + 0.000223 sheme_c + 0.209121 gtp_c + 0.000335 nadph_c + 0.008253 mg2_c + 0.000223 enter_c + 0.012379 nh4_c + 0.000279 accoa_c + 0.000307 ni2_c + 0.004952 cl_c + 0.000223 mlthf_c + 0.005707 pg160_c + 0.154187 glycogen_c + 0.004439 pg161_c + 0.000223 q8h2_c + 0.000605 murein3px4p_p + 0.000223 fad_c + 0.000223 pheme_c + 0.055234 trp_dsh_L_c + 0.005381 murein4p4p_p + 0.000223 pydx5p_c + 0.001787 nad_c + 0.024805 datp_c + 0.004126 so4_c + 0.000223 amet_c + 0.005448 murein4px4p_p + 0.246506 thr_dsh_L_c + 0.28742 arg_dsh_L_c + 0.140101 utp_c + 0.006744 spmd_c + 0.133993 tyr_dsh_L_c + 0.024805 dttp_c + 0.255712 gln_dsh_L_c + 3e-06 lipopb_c + 0.000223 thmpp_c + 0.000223 ribflv_c + 0.234232 asn_dsh_L_c + 0.411184 val_dsh_L_c + 0.214798 pro_dsh_L_c + 0.009618 pe161_c + 0.180021 phe_dsh_L_c + 0.000223 hemeO_c + 0.437778 leu_dsh_L_c + 0.234232 asp_dsh_L_c + 7e-06 mocogdp_c + 0.001961 pg181_p + 0.000223 5mthf_c + 0.282306 ile_dsh_L_c + 3.1e-05 malcoa_c + 0.004952 ca2_c + 0.000223 2dmmql8_c + 54.119975 atp_c + 0.000223 mql8_c + 0.008151 colipa_e + 0.000673 murein4px4px4p_p + 0.333448 lys_dsh_L_c + 0.002944 clpn160_p + 0.000223 thf_c + 0.00118 clpn181_p + 9.8e-05 succoa_c + 0.209684 ser_dsh_L_c + 0.092056 his_dsh_L_c + 2.5e-05 2fe2s_c + 0.004957 pe181_c + 0.025612 dctp_c + 0.255712 glu_dsh_L_c + 0.499149 ala_dsh_L_c + 0.031798 pe160_p + 0.001345 murein3p3p_p + 0.00229 clpn161_p + 2.4e-05 cobalt2_c --> 53.95 adp_c + 0.749831 ppi_c + 53.95 h_c + 53.945874 pi_c 0.000691 mn2_c + 54.124831 atp_c + 0.02106 pe161_p + 0.006715 fe2_c + 5.5e-05 udcpdp_c + 0.019456 kdo2lipid4_e + 0.000576 coa_c + 0.000447 nadp_c + 0.612638 gly_c + 0.026166 datp_c + 0.027017 dgtp_c + 0.133508 ctp_c + 0.004338 so4_c + 0.000709 cu2_c + 2.6e-05 2fe2s_c + 0.013013 nh4_c + 0.26316 gln_dsh_L_c + 0.241055 asn_dsh_L_c + 0.241055 asp_dsh_L_c + 0.195193 k_c + 0.295792 arg_dsh_L_c + 0.144104 utp_c + 2e-06 btn_c + 0.513689 ala_dsh_L_c + 0.00026 4fe4s_c + 0.137896 tyr_dsh_L_c + 0.007808 fe3_c + 0.000122 bmocogdp_c + 0.343161 lys_dsh_L_c + 2.5e-05 cobalt2_c + 7e-06 mobd_c + 0.005205 cl_c + 0.26316 glu_dsh_L_c + 0.221055 pro_dsh_L_c + 0.153686 met_dsh_L_c + 0.185265 phe_dsh_L_c + 0.000223 pheme_c + 0.001831 nad_c + 0.253687 thr_dsh_L_c + 0.000223 thmpp_c + 0.054154 pe161_c + 0.423162 val_dsh_L_c + 0.000223 10fthf_c + 0.056843 trp_dsh_L_c + 0.000223 2ohph_c + 0.027017 dctp_c + 0.017868 pe160_c + 0.026166 dttp_c + 0.09158 cys_dsh_L_c + 0.215792 ser_dsh_L_c + 0.000223 mlthf_c + 0.013894 murein5px4p_p + 0.000223 sheme_c + 0.215096 gtp_c + 0.008675 mg2_c + 0.000223 thf_c + 0.094738 his_dsh_L_c + 0.290529 ile_dsh_L_c + 0.000223 fad_c + 0.000223 pydx5p_c + 0.000223 amet_c + 0.000323 ni2_c + 48.601527 h2o_c + 0.005205 ca2_c + 0.045946 pe160_p + 0.000341 zn2_c + 0.000223 ribflv_c + 0.450531 leu_dsh_L_c --> 53.95 adp_c + 53.95 h_c + 0.773903 ppi_c + 53.945662 pi_c 12ppd_dsh_R_e --> 12ppd_dsh_S_e --> 14glucan_e --> 15dap_e --> 23camp_e --> 23ccmp_e --> 23cgmp_e --> 23cump_e --> 23dappa_e --> 26dap_dsh_M_e --> 2ddglcn_e --> 34dhpac_e --> 3amp_e --> 3cmp_e --> 3gmp_e --> 3hcinnm_e --> 3hpp_e --> 3hpppn_e --> 3ump_e --> 4abut_e --> 4hoxpacd_e --> 5dglcn_e --> 5mtr_e --> LalaDglu_e --> LalaDgluMdap_e --> LalaDgluMdapDala_e --> LalaLglu_e --> ac_e --> acac_e --> acald_e --> acgal_e --> acgal1p_e --> acgam_e --> acgam1p_e --> acmana_e --> acmum_e --> acnam_e --> acolipa_e --> acser_e --> ade_e --> adn_e --> adocbl_e --> ag_e --> agm_e --> akg_e --> ala_dsh_B_e --> ala_dsh_D_e --> ala_dsh_L_e --> alaala_e --> all_dsh_D_e --> alltn_e --> amp_e --> anhgm_e --> arab_dsh_L_e --> arbt_e --> arbtn_e --> arbtn_dsh_fe3_e --> arg_dsh_L_e --> ascb_dsh_L_e --> asn_dsh_L_e --> aso3_e --> asp_dsh_L_e --> btn_e --> but_e --> butso3_e --> ca2_e <=> cbi_e --> cbl1_e <=> cd2_e --> cgly_e --> chol_e --> chtbs_e --> cit_e --> cl_e <=> cm_e --> cmp_e --> co2_e <=> cobalt2_e <=> colipa_e --> colipap_e --> cpgn_e --> cpgn_dsh_un_e --> crn_e --> crn_dsh_D_e --> csn_e --> cu_e --> cu2_e <=> cyan_e --> cynt_e --> cys_dsh_D_e --> cys_dsh_L_e --> cytd_e --> dad_dsh_2_e --> damp_e --> dca_e --> dcmp_e --> dcyt_e --> ddca_e --> dgmp_e --> dgsn_e --> dha_e --> dimp_e --> din_e --> dms_e --> dmso_e --> dopa_e --> doxrbcn_e --> dtmp_e --> dump_e --> duri_e --> eca4colipa_e --> enlipa_e --> enter_e --> etha_e --> ethso3_e --> etoh_e --> f6p_e --> fald_e --> fe2_e <=> fe3_e <=> fe3dcit_e --> fe3dhbzs_e --> fe3hox_e --> fe3hox_dsh_un_e --> fecrm_e --> fecrm_dsh_un_e --> feenter_e --> feoxam_e --> feoxam_dsh_un_e --> for_e --> fru_e --> frulys_e --> fruur_e --> fuc_dsh_L_e --> fum_e --> fusa_e --> g1p_e --> g3pc_e --> g3pe_e --> g3pg_e --> g3pi_e --> g3ps_e --> g6p_e --> gal_e --> gal_dsh_bD_e --> gal1p_e --> galct_dsh_D_e --> galctn_dsh_D_e --> galctn_dsh_L_e --> galt_e --> galur_e --> gam_e --> gam6p_e --> gbbtn_e --> gdp_e --> glc_dsh_D_e <=> glcn_e --> glcr_e --> glcur_e --> glcur1p_e --> gln_dsh_L_e --> glu_dsh_L_e --> gly_e --> glyald_e --> glyb_e --> glyc_e --> glyc_dsh_R_e --> glyc2p_e --> glyc3p_e --> glyclt_e --> gmp_e --> gsn_e --> gthox_e --> gthrd_e --> gtp_e --> gua_e --> h_e <=> h2_e --> h2o_e <=> h2o2_e --> h2s_e --> hacolipa_e --> halipa_e --> hdca_e --> hdcea_e --> hg2_e --> his_dsh_L_e --> hom_dsh_L_e --> hxa_e --> hxan_e --> idon_dsh_L_e --> ile_dsh_L_e --> imp_e --> indole_e --> inost_e --> ins_e --> isetac_e --> k_e <=> kdo2lipid4_e --> lac_dsh_D_e --> lac_dsh_L_e --> lcts_e --> leu_dsh_L_e --> lipa_e --> lipa_cold_e --> lipoate_e --> lys_dsh_L_e --> lyx_dsh_L_e --> mal_dsh_D_e --> mal_dsh_L_e --> malt_e --> malthx_e --> maltpt_e --> malttr_e --> maltttr_e --> man_e --> man6p_e --> manglyc_e --> melib_e --> meoh_e --> met_dsh_D_e --> met_dsh_L_e --> metsox_dsh_R_dsh_L_e --> metsox_dsh_S_dsh_L_e --> mg2_e <=> mincyc_e --> minohp_e --> mmet_e --> mn2_e <=> mnl_e --> mobd_e <=> mso3_e --> n2o_e --> na1_e <=> nac_e --> nh4_e <=> ni2_e <=> nmn_e --> no_e --> no2_e --> no3_e --> novbcn_e --> o16a4colipa_e --> o2_e <=> o2s_e --> ocdca_e --> ocdcea_e --> octa_e --> orn_e --> orot_e --> pacald_e --> peamn_e --> phe_dsh_L_e --> pheme_e --> pi_e <=> pnto_dsh_R_e --> ppa_e --> ppal_e --> pppn_e --> ppt_e --> pro_dsh_L_e --> progly_e --> psclys_e --> pser_dsh_L_e --> ptrc_e --> pydam_e --> pydx_e --> pydxn_e --> pyr_e --> quin_e --> r5p_e --> rfamp_e --> rib_dsh_D_e --> rmn_e --> sbt_dsh_D_e --> sel_e <=> ser_dsh_D_e --> ser_dsh_L_e --> skm_e --> slnt_e <=> so2_e --> so3_e --> so4_e <=> spmd_e --> succ_e --> sucr_e --> sulfac_e --> tartr_dsh_D_e --> tartr_dsh_L_e --> taur_e --> tcynt_e --> thm_e --> thr_dsh_L_e --> thrp_e --> thym_e --> thymd_e --> tma_e --> tmao_e --> tre_e --> trp_dsh_L_e --> tsul_e --> ttdca_e --> ttdcea_e --> ttrcyc_e --> tungs_e <=> tym_e --> tyr_dsh_L_e --> tyrp_e --> uacgam_e --> udpacgal_e --> udpg_e --> udpgal_e --> udpglcur_e --> ump_e --> ura_e --> urea_e --> uri_e --> val_dsh_L_e --> xan_e --> xmp_e --> xtsn_e --> xyl_dsh_D_e --> xylu_dsh_L_e --> zn2_e <=> 12dgr120_p --> 12dgr120_c 12dgr140_p --> 12dgr140_c 12dgr141_p --> 12dgr141_c 12dgr160_p --> 12dgr160_c 12dgr161_p --> 12dgr161_c 12dgr180_p --> 12dgr180_c 12dgr181_p --> 12dgr181_c 12ppd_dsh_R_e <=> 12ppd_dsh_R_p 12ppd_dsh_R_p <=> 12ppd_dsh_R_c 12ppd_dsh_S_e <=> 12ppd_dsh_S_p 12ppd_dsh_S_p <=> 12ppd_dsh_S_c h2o_c + 14glucan_p + atp_c --> adp_c + pi_c + h_c + 14glucan_c 14glucan_e --> 14glucan_p 23camp_e <=> 23camp_p 23ccmp_e <=> 23ccmp_p 23cgmp_e <=> 23cgmp_p 23cump_e <=> 23cump_p 23dappa_p + h_p --> 23dappa_c + h_c 23dappa_e <=> 23dappa_p h2o_p + 23cump_p --> h_p + 3ump_p 23ccmp_p + h2o_p --> 3cmp_p + h_p h2o_p + 23camp_p --> 3amp_p + h_p h2o_p + 23cgmp_p --> 3gmp_p + h_p 26dap_dsh_M_e <=> 26dap_dsh_M_p 2ddecg3p_p --> 2ddecg3p_c 2tdecg3p_p --> 2tdecg3p_c 2tdec7eg3p_p --> 2tdec7eg3p_c 2hdecg3p_p --> 2hdecg3p_c 2hdec9eg3p_p --> 2hdec9eg3p_c 2odecg3p_p --> 2odecg3p_c 2odec11eg3p_p --> 2odec11eg3p_c 2agpe120_p --> 2agpe120_c 2agpe140_p --> 2agpe140_c 2agpe141_p --> 2agpe141_c 2agpe160_p --> 2agpe160_c 2agpe161_p --> 2agpe161_c 2agpe180_p --> 2agpe180_c 2agpe181_p --> 2agpe181_c ddca_c + 2agpe120_c + atp_c --> amp_c + ppi_c + pe120_c atp_c + 2agpe140_c + ttdca_c --> amp_c + ppi_c + pe140_c ttdcea_c + atp_c + 2agpe141_c --> pe141_c + amp_c + ppi_c hdca_c + atp_c + 2agpe160_c --> ppi_c + pe160_c + amp_c 2agpe161_c + hdcea_c + atp_c --> amp_c + ppi_c + pe161_c ocdca_c + 2agpe180_c + atp_c --> pe180_c + amp_c + ppi_c ocdcea_c + 2agpe181_c + atp_c --> amp_c + ppi_c + pe181_c 2agpg120_p --> 2agpg120_c 2agpg140_p --> 2agpg140_c 2agpg141_p --> 2agpg141_c 2agpg160_p --> 2agpg160_c 2agpg161_p --> 2agpg161_c 2agpg180_p --> 2agpg180_c 2agpg181_p --> 2agpg181_c ddca_c + atp_c + 2agpg120_c --> amp_c + pg120_c + ppi_c 2agpg140_c + ttdca_c + atp_c --> amp_c + ppi_c + pg140_c 2agpg141_c + ttdcea_c + atp_c --> ppi_c + pg141_c + amp_c atp_c + hdca_c + 2agpg160_c --> ppi_c + amp_c + pg160_c hdcea_c + atp_c + 2agpg161_c --> pg161_c + amp_c + ppi_c ocdca_c + 2agpg180_c + atp_c --> amp_c + pg180_c + ppi_c 2agpg181_c + atp_c + ocdcea_c --> amp_c + ppi_c + pg181_c nadh_c + h_c + 2dhguln_c --> glcn_c + nad_c h_c + nadph_c + 2dhguln_c --> glcn_c + nadp_c nadh_c + h_c + 2dhguln_c --> idon_dsh_L_c + nad_c h_c + nadph_c + 2dhguln_c --> nadp_c + idon_dsh_L_c 2mahmp_c + h2o_c --> pi_c + h_c + 4ampm_c 34dhpac_e <=> 34dhpac_p h2o_c + 3amac_c + h_c --> msa_c + nh4_c 3amp_e <=> 3amp_p 3cmp_e <=> 3cmp_p 3gmp_e <=> 3gmp_p 3hdecACP_c --> h2o_c + tdec2eACP_c 3hddecACP_c --> h2o_c + tddec2eACP_c 3hcddec5eACP_c --> h2o_c + t3c5ddeceACP_c 3hmrsACP_c --> h2o_c + tmrs2eACP_c 3hcmrs7eACP_c --> h2o_c + t3c7mrseACP_c 3hpalmACP_c --> h2o_c + tpalm2eACP_c 3hcpalm9eACP_c --> h2o_c + t3c9palmeACP_c 3hoctaACP_c --> h2o_c + toctd2eACP_c 3hcvac11eACP_c --> h2o_c + t3c11vaceACP_c 3haACP_c --> but2eACP_c + h2o_c 3hhexACP_c --> h2o_c + thex2eACP_c 3hoctACP_c --> h2o_c + toct2eACP_c nadh_c + 3hcinnm_c + o2_c + h_c --> h2o_c + nad_c + dhcinnm_c nadh_c + 3hpppn_c + h_c + o2_c --> nad_c + h2o_c + dhpppn_c 3hpp_e <=> 3hpp_p h_c + 3hpp_c --> 3hpp_p + h_p atp_c + 3dhguln_c --> adp_c + h_c + 3dhgulnp_c h2o_p + 3ump_p --> pi_p + uri_p 3cmp_p + h2o_p --> pi_p + cytd_p h2o_p + 3amp_p --> adn_p + pi_p h2o_p + 3gmp_p --> pi_p + gsn_p h_c + nadph_c + 3odecACP_c <=> nadp_c + 3hdecACP_c 3oddecACP_c + h_c + nadph_c <=> nadp_c + 3hddecACP_c 3ocddec5eACP_c + h_c + nadph_c --> 3hcddec5eACP_c + nadp_c 3omrsACP_c + nadph_c + h_c <=> nadp_c + 3hmrsACP_c 3ocmrs7eACP_c + h_c + nadph_c --> nadp_c + 3hcmrs7eACP_c h_c + nadph_c + 3opalmACP_c <=> nadp_c + 3hpalmACP_c 3ocpalm9eACP_c + nadph_c + h_c --> nadp_c + 3hcpalm9eACP_c 3ooctdACP_c + h_c + nadph_c <=> nadp_c + 3hoctaACP_c 3ocvac11eACP_c + nadph_c + h_c --> nadp_c + 3hcvac11eACP_c actACP_c + h_c + nadph_c <=> nadp_c + 3haACP_c 3ohexACP_c + h_c + nadph_c <=> nadp_c + 3hhexACP_c 3ooctACP_c + h_c + nadph_c <=> 3hoctACP_c + nadp_c h_c + malACP_c + ocACP_c --> co2_c + ACP_c + 3odecACP_c h_c + malACP_c + dcaACP_c --> co2_c + ACP_c + 3oddecACP_c h_c + cdec3eACP_c + malACP_c --> 3ocddec5eACP_c + co2_c + ACP_c malACP_c + h_c + ddcaACP_c --> co2_c + ACP_c + 3omrsACP_c cddec5eACP_c + h_c + malACP_c --> co2_c + ACP_c + 3ocmrs7eACP_c h_c + malACP_c + myrsACP_c --> co2_c + ACP_c + 3opalmACP_c malACP_c + h_c + tdeACP_c --> co2_c + ACP_c + 3ocpalm9eACP_c h_c + malACP_c + palmACP_c --> 3ooctdACP_c + co2_c + ACP_c h_c + malACP_c + hdeACP_c --> co2_c + ACP_c + 3ocvac11eACP_c butACP_c + malACP_c + h_c --> 3ohexACP_c + ACP_c + co2_c hexACP_c + h_c + malACP_c --> co2_c + ACP_c + 3ooctACP_c oxadpcoa_c + coa_c --> succoa_c + accoa_c h2o_c + LalaDgluMdap_p + atp_c --> LalaDgluMdap_c + pi_c + h_c + adp_c LalaDgluMdap_e <=> LalaDgluMdap_p 3ump_e <=> 3ump_p o2_p + dopa_p + h2o_p --> 34dhpac_p + nh4_p + h2o2_p 4hoxpacd_e <=> 4hoxpacd_p h2o_c + phthr_c --> 4hthr_c + pi_c h2o_c + LalaDgluMdapDala_c --> LalaDgluMdap_c + ala_dsh_D_c h2o_p + LalaDgluMdapDala_p --> LalaDgluMdap_p + ala_dsh_D_p h2o_c + atp_c + LalaDgluMdapDala_p --> adp_c + pi_c + h_c + LalaDgluMdapDala_c LalaDgluMdapDala_e <=> LalaDgluMdapDala_p 5dglcn_c + h_c + nadph_c <=> glcn_c + nadp_c h_p + 5dglcn_p <=> 5dglcn_c + h_c 5dglcn_e <=> 5dglcn_p dad_dsh_5_c + h2o_c --> 5drib_c + ade_c 5mtr_e <=> 5mtr_p 5mtr_c + h_c --> h_p + 5mtr_p ru5p_dsh_D_c <=> ara5p_c ttdca_c + ACP_c + atp_c --> myrsACP_c + ppi_c + amp_c ACP_c + ttdcea_c + atp_c --> ppi_c + amp_c + tdeACP_c ACP_c + hdca_c + atp_c --> ppi_c + amp_c + palmACP_c ACP_c + hdcea_c + atp_c --> ppi_c + amp_c + hdeACP_c ocdcea_c + ACP_c + atp_c --> octeACP_c + amp_c + ppi_c ocdca_c + atp_c + ACP_c --> ocdcaACP_c + ppi_c + amp_c ACP_c + ddca_c + atp_c --> ppi_c + amp_c + ddcaACP_c dca_c + ACP_c + atp_c --> ppi_c + amp_c + dcaACP_c octa_c + ACP_c + atp_c --> ocACP_c + ppi_c + amp_c o2_c + h2o_c + aact_c --> h2o2_c + mthgxl_c + nh4_c dtdp4aaddg_c + unagamu_c --> h_c + dtdp_c + unagamuf_c 14glucan_c --> malthx_c 14glucan_p --> malthx_p h2o_c + arbt6p_c --> g6p_c + hqn_c 4abut_c + akg_c --> sucsal_c + glu_dsh_L_c nad_c + h2o_c + 4abutn_c --> nadh_c + 4abut_c + 2.0 h_c 4abut_p + h_p --> 4abut_c + h_c 4abut_e <=> 4abut_p accoa_c + acac_c --> ac_c + aacoa_c 2.0 accoa_c <=> aacoa_c + coa_c btcoa_c + accoa_c <=> 3ohcoa_c + coa_c hxcoa_c + accoa_c <=> 3oocoa_c + coa_c occoa_c + accoa_c <=> 3odcoa_c + coa_c accoa_c + dcacoa_c <=> 3oddcoa_c + coa_c ddcacoa_c + accoa_c <=> 3otdcoa_c + coa_c tdcoa_c + accoa_c <=> coa_c + 3ohdcoa_c 3oodcoa_c + coa_c <=> pmtcoa_c + accoa_c h_p + acac_p <=> acac_c + h_c acac_e <=> acac_p nad_c + acald_c + coa_c <=> nadh_c + h_c + accoa_c acald_e <=> acald_p acald_p <=> acald_c anth_c + accoa_c --> acanth_c + coa_c gtp_c + adocbip_c + h_c --> agdpcbi_c + ppi_c atp_c + hco3_c + accoa_c --> adp_c + pi_c + h_c + malcoa_c atp_c + ppa_c + coa_c --> adp_c + pi_c + ppcoa_c acgal1p_p + h2o_p --> pi_p + acgal_p acgal1p_e <=> acgal1p_p acgal_e <=> acgal_p h2o_p + acgam1p_p --> pi_p + acgam_p acgam1p_e <=> acgam1p_p acgam_c + atp_c --> acgam6p_c + adp_c + h_c uacgam_c + udcpp_c --> unaga_c + ump_c pep_c + acgam_p --> acgam6p_c + pyr_c acgam_e <=> acgam_p atp_c + acglu_c --> adp_c + acg5p_c glu_dsh_L_c + accoa_c --> acglu_c + coa_c + h_c 2obut_c + h_c + pyr_c --> co2_c + 2ahbut_c ac_c + atp_c <=> adp_c + actp_c 2.0 pyr_c + h_c --> alac_dsh_S_c + co2_c h2o_c + acmum6p_c --> acgam6p_c + lac_dsh_D_c unaga_c + uacmamu_c --> udp_c + unagamu_c + h_c pep_c + acmana_p --> pyr_c + acmanap_c acmana_e <=> acmana_p acmum_p + pep_c --> pyr_c + acmum6p_c acmum_e --> acmum_p h_p + acnam_p --> h_c + acnam_c acnam_e <=> acnam_p acnam_c --> pyr_c + acmana_c btcoa_c + fad_c <=> fadh2_c + b2coa_c hxcoa_c + fad_c <=> fadh2_c + hx2coa_c occoa_c + fad_c <=> fadh2_c + oc2coa_c fad_c + dcacoa_c <=> dc2coa_c + fadh2_c fad_c + ddcacoa_c <=> fadh2_c + dd2coa_c tdcoa_c + fad_c <=> fadh2_c + td2coa_c pmtcoa_c + fad_c <=> hdd2coa_c + fadh2_c stcoa_c + fad_c <=> fadh2_c + od2coa_c ACP_c + accoa_c <=> acACP_c + coa_c h2o_c + acorn_c --> ac_c + orn_c acolipa_p + h2o_c + atp_c --> adp_c + pi_c + h_c + acolipa_e acon_dsh_T_c <=> acon_dsh_C_c acon_dsh_T_c + amet_c --> aconm_c + ahcys_c cit_c <=> acon_dsh_C_c + h2o_c acon_dsh_C_c + h2o_c <=> icit_c acorn_c + akg_c <=> acg5sa_c + glu_dsh_L_c pi_c + h_c + ddcaACP_c --> ddcap_c + ACP_c myrsACP_c + pi_c + h_c --> ttdcap_c + ACP_c pi_c + h_c + tdeACP_c --> ACP_c + ttdceap_c pi_c + h_c + palmACP_c --> ACP_c + hdcap_c pi_c + hdeACP_c + h_c --> hdceap_c + ACP_c ocdcaACP_c + pi_c + h_c --> ocdcap_c + ACP_c pi_c + octeACP_c + h_c --> ACP_c + ocdceap_c apoACP_c + coa_c --> pap_c + ACP_c + h_c ac_c + atp_c + coa_c --> amp_c + ppi_c + accoa_c acser_e <=> acser_p acser_c --> acser_p ac_p + h_p <=> ac_c + h_c ac_p + na1_p --> na1_c + ac_c ac_e <=> ac_p h2o_c + adn_c + h_c --> nh4_c + ins_c 4adcho_c --> pyr_c + h_c + 4abz_c chor_c + gln_dsh_L_c --> glu_dsh_L_c + 4adcho_c ade_c + h2o_c + h_c --> nh4_c + hxan_c ade_p + h_p <=> ade_c + h_c ade_e <=> ade_p atp_c + amp_c <=> 2.0 adp_c gtp_c + amp_c <=> gdp_c + adp_c itp_c + amp_c <=> adp_c + idp_c h_c + amet_c --> ametam_c + co2_c atp_c --> camp_c + ppi_c adn_c + atp_c --> adp_c + amp_c + h_c h2o_c + adn_c --> ade_c + rib_dsh_D_c adn_p + h_p --> adn_c + h_c adn_p + h_p <=> adn_c + h_c adn_e <=> adn_p adocbi_c + atp_c --> adp_c + h_c + adocbip_c rdmbzi_c + agdpcbi_c --> h_c + adocbl_c + gmp_c adocbl_p + h2o_c + atp_c --> adp_c + pi_c + adocbl_c + h_c h_p + adocbl_e --> adocbl_p + h_c h2o_c + adprib_c --> r5p_c + amp_c + 2.0 h_c ade_c + prpp_c --> amp_c + ppi_c aps_c + atp_c --> adp_c + paps_c + h_c dcamp_c <=> fum_c + amp_c 25aics_c <=> aicar_c + fum_c asp_dsh_L_c + gtp_c + imp_c --> gdp_c + pi_c + dcamp_c + 2.0 h_c h2o_c + acgam6p_c --> ac_c + gam6p_c h2o_c + anhgm3p_c --> anhgm_c + LalaDgluMdap_c h2o_p + anhgm3p_p --> LalaDgluMdap_p + anhgm_p h2o_c + anhgm3p_c --> acgam_c + anhm3p_c h_p + anhgm3p_p --> anhgm3p_c + h_c anhgm4p_c + h2o_c --> LalaDgluMdapDala_c + anhgm_c anhgm4p_p + h2o_p --> anhgm_p + LalaDgluMdapDala_p anhgm4p_c + h2o_c --> anhgm3p_c + ala_dsh_D_c anhgm4p_p + h2o_p --> anhgm3p_p + ala_dsh_D_p anhgm4p_c + h2o_c --> acgam_c + anhm4p_c anhgm4p_p + h_p --> anhgm4p_c + h_c anhgm_c + h2o_c --> acgam_c + anhm_c adphep_dsh_DD_c --> adphep_dsh_LD_c agm_c + h2o_c --> ptrc_c + urea_c h_p + anhgm_p --> anhgm_c + h_c agm_e <=> agm_p ddcaACP_c + 1ddecg3p_c --> ACP_c + pa120_c myrsACP_c + 1tdecg3p_c --> ACP_c + pa140_c tdeACP_c + 1tdec7eg3p_c --> pa141_c + ACP_c 1hdecg3p_c + palmACP_c --> ACP_c + pa160_c hdeACP_c + 1hdec9eg3p_c --> ACP_c + pa161_c ocdcaACP_c + 1odecg3p_c --> pa180_c + ACP_c 1odec11eg3p_c + octeACP_c --> pa181_c + ACP_c pi_c + nadp_c + acg5sa_c <=> h_c + nadph_c + acg5p_c h_e + ag_c --> ag_e + h_c h2o_c + ahcys_c --> ade_c + rhcys_c 10fthf_c + aicar_c <=> fprica_c + thf_c air_c + atp_c + hco3_c --> adp_c + 5caiz_c + pi_c + h_c 5aizc_c <=> 5caiz_c nad_c + akg_c + coa_c --> nadh_c + co2_c + succoa_c h_p + akg_p <=> akg_c + h_c akg_e <=> akg_p alaala_c + h2o_c --> 2.0 ala_dsh_D_c alaala_p + h2o_c + atp_c --> alaala_c + adp_c + pi_c + h_c atp_c + 2.0 ala_dsh_D_c <=> alaala_c + adp_c + pi_c + h_c alaala_e <=> alaala_p LalaDglu_c <=> LalaLglu_c ala_dsh_L_c <=> ala_dsh_D_c pydx5p_c + ala_dsh_D_c --> pyam5p_c + pyr_c ala_dsh_L_c + akg_c <=> glu_dsh_L_c + pyr_c ala_dsh_L_c + pydx5p_c --> pyr_c + pyam5p_c atp_c + ala_dsh_L_c + trnaala_c --> amp_c + alatrna_c + ppi_c h2o_c + ala_dsh_L_p + atp_c --> adp_c + pi_c + h_c + ala_dsh_L_c ala_dsh_L_p + h_p --> ala_dsh_L_c + h_c ala_dsh_L_p + h_p <=> ala_dsh_L_c + h_c ala_dsh_L_p + na1_p --> na1_c + ala_dsh_L_c ala_dsh_L_e <=> ala_dsh_L_p nadh_c + h_c + glyald_c <=> glyc_c + nad_c etoh_c + nad_c <=> nadh_c + h_c + acald_c nad_c + h2o_c + pacald_c <=> nadh_c + pac_c + 2.0 h_c nad_c + acald_c + h2o_c --> nadh_c + ac_c + 2.0 h_c h2o_c + acald_c + nadp_c --> ac_c + 2.0 h_c + nadph_c h2o_c + ppal_c + nadp_c --> 2.0 h_c + nadph_c + ppa_c nad_c + h2o_c + btal_c --> nadh_c + 2.0 h_c + but_c all_dsh_D_c + atp_c --> adp_c + all6p_c + h_c all6p_c <=> allul6p_c alltt_c + 2.0 h_c + 2.0 h2o_c --> co2_c + urdglyc_c + 2.0 nh4_c h2o_c + alltn_c --> alltt_c + h_c h_p + alltn_p <=> h_c + alltn_c alltn_e <=> alltn_p allul6p_c <=> f6p_c all_dsh_D_p + h2o_c + atp_c --> all_dsh_D_c + adp_c + pi_c + h_c all_dsh_D_e <=> all_dsh_D_p pe160_p + alpp_p --> 2agpe160_p + lpp_p pg160_p + alpp_p --> 2agpg160_p + lpp_p mthgxl_c + h_c + nadph_c --> nadp_c + acetol_c nadh_c + acetol_c + h_c --> 12ppd_dsh_R_c + nad_c altrn_c --> 2ddglcn_c + h2o_c h2o_c + anhm3p_c --> LalaDgluMdap_c + anhm_c h2o_c + anhm4p_c --> LalaDgluMdapDala_c + anhm_c h2o_c + anhm4p_c --> anhm3p_c + ala_dsh_D_c malt_c + malttr_c --> maltttr_c + glc_dsh_D_c malt_c + maltttr_c --> maltpt_c + glc_dsh_D_c malt_c + maltpt_c --> malthx_c + glc_dsh_D_c malt_c + malthx_c --> malthp_c + glc_dsh_D_c acmanap_c <=> acgam6p_c acmana_c + atp_c --> adp_c + acmanap_c + h_c 8aonn_c + amet_c <=> amob_c + dann_c 2dmmql8_c + amet_c --> ahcys_c + h_c + mql8_c nad_c + air_c + h2o_c --> nadh_c + 2.0 for_c + 4ampm_c + 3.0 h_c h2o_c + amp_c --> ade_c + r5p_c h2o_c + cgly_c --> gly_c + cys_dsh_L_c h2o_c + progly_c --> pro_dsh_L_c + gly_c amp_e <=> amp_p anhgm_e <=> anhgm_p h2o_c + atp_c + anhm_c --> adp_c + h_c + acmum6p_c anth_c + prpp_c --> pran_c + ppi_c chor_c + gln_dsh_L_c --> h_c + glu_dsh_L_c + pyr_c + anth_c 2aobut_c + h_c --> aact_c + co2_c pimACP_c + ala_dsh_L_c --> co2_c + ACP_c + 8aonn_c h2o_c + ap4a_c --> 2.0 adp_c + 2.0 h_c 2.0 atp_c + h_c --> ap4a_c + ppi_c h2o_c + ap5a_c --> adp_c + atp_c + 2.0 h_c 15dap_c + ametam_c --> 5mta_c + na15dap_c + h_c ddcap_c + glyc3p_c --> pi_c + 1ddecg3p_c + h_c ttdcap_c + glyc3p_c --> pi_c + 1tdecg3p_c + h_c glyc3p_c + ttdceap_c --> pi_c + 1tdec7eg3p_c + h_c glyc3p_c + hdcap_c --> 1hdecg3p_c + pi_c + h_c hdceap_c + glyc3p_c --> pi_c + h_c + 1hdec9eg3p_c ocdcap_c + glyc3p_c --> 1odecg3p_c + pi_c + h_c ocdceap_c + glyc3p_c --> pi_c + h_c + 1odec11eg3p_c ddcap_c + h2o_c --> pi_c + 2.0 h_c + ddca_c h2o_c + ttdcap_c --> pi_c + 2.0 h_c + ttdca_c h2o_c + ttdceap_c --> pi_c + 2.0 h_c + ttdcea_c h2o_c + hdcap_c --> hdca_c + pi_c + 2.0 h_c h2o_c + hdceap_c --> pi_c + 2.0 h_c + hdcea_c h2o_c + ocdcap_c --> pi_c + 2.0 h_c + ocdca_c h2o_c + ocdceap_c --> ocdcea_c + pi_c + 2.0 h_c nadh_c + aact_c + h_c <=> nad_c + appl_c 5apru_c + h_c + nadph_c --> nadp_c + 5aprbu_c arab_dsh_L_c <=> rbl_dsh_L_c 2.0 arbtn_dsh_fe3_c + fadh2_c --> fad_c + 2.0 h_c + 2.0 arbtn_c + 2.0 fe2_c 2.0 arbtn_dsh_fe3_c + fmnh2_c --> fmn_c + 2.0 h_c + 2.0 arbtn_c + 2.0 fe2_c rbflvrd_c + 2.0 arbtn_dsh_fe3_c --> ribflv_c + 2.0 h_c + 2.0 arbtn_c + 2.0 fe2_c h2o_c + arbtn_dsh_fe3_p + atp_c --> adp_c + arbtn_dsh_fe3_c + h_c + pi_c arbtn_e + fe3_e --> arbtn_dsh_fe3_e h_p + arbtn_p --> arbtn_e + h_c arbtn_dsh_fe3_e + h_p --> arbtn_dsh_fe3_p + h_c h_p + arbtn_c --> h_c + arbtn_p arbt_p + pep_c --> pyr_c + arbt6p_c arbt_e --> arbt_p atp_c + arab_dsh_L_p + h2o_c --> adp_c + pi_c + h_c + arab_dsh_L_c h_p + arab_dsh_L_p <=> arab_dsh_L_c + h_c h_p + arab_dsh_L_c --> h_c + arab_dsh_L_p arab_dsh_L_e <=> arab_dsh_L_p agm_c + arg_dsh_L_p <=> agm_p + arg_dsh_L_c arg_dsh_L_c + h_c --> agm_c + co2_c h_p + arg_dsh_L_p --> agm_p + co2_p orn_c + arg_dsh_L_p <=> orn_p + arg_dsh_L_c argsuc_c <=> arg_dsh_L_c + fum_c asp_dsh_L_c + atp_c + citr_dsh_L_c --> argsuc_c + amp_c + ppi_c + h_c arg_dsh_L_c + trnaarg_c + atp_c --> amp_c + ppi_c + argtrna_c h2o_c + atp_c + arg_dsh_L_p --> adp_c + pi_c + h_c + arg_dsh_L_c arg_dsh_L_c + h_p --> arg_dsh_L_p + h_c arg_dsh_L_e <=> arg_dsh_L_p pi_c + nadp_c + aspsa_c <=> h_c + nadph_c + 4pasp_c ascb6p_c + h2o_c --> 3dhgulnp_c + h_c ascb_dsh_L_p + pep_c --> ascb6p_c + pyr_c ascb_dsh_L_e <=> ascb_dsh_L_p h2o_c + asn_dsh_L_c --> nh4_c + asp_dsh_L_c h2o_p + asn_dsh_L_p --> asp_dsh_L_p + nh4_p asp_dsh_L_c + h2o_c + atp_c + gln_dsh_L_c --> amp_c + ppi_c + glu_dsh_L_c + asn_dsh_L_c + h_c asp_dsh_L_c + nh4_c + atp_c --> amp_c + ppi_c + asn_dsh_L_c + h_c trnaasn_c + atp_c + asn_dsh_L_c --> amp_c + ppi_c + asntrna_c asn_dsh_L_p + h2o_c + atp_c --> adp_c + pi_c + h_c + asn_dsh_L_c h_p + asn_dsh_L_p <=> h_c + asn_dsh_L_c asn_dsh_L_e <=> asn_dsh_L_p atp_c + h2o_c + aso3_c --> adp_c + pi_c + h_c + aso3_p aso3_e <=> aso3_p asp_dsh_L_c + h_c --> co2_c + ala_dsh_B_c cbp_c + asp_dsh_L_c --> pi_c + h_c + cbasp_c atp_c + asp_dsh_L_c <=> adp_c + 4pasp_c q8_c + asp_dsh_L_c --> q8h2_c + iasp_c + h_c mqn8_c + asp_dsh_L_c --> iasp_c + h_c + mql8_c fum_c + asp_dsh_L_c --> succ_c + iasp_c + h_c o2_c + asp_dsh_L_c --> iasp_c + h2o2_c + h_c asp_dsh_L_c --> nh4_c + fum_c akg_c + asp_dsh_L_c <=> glu_dsh_L_c + oaa_c trnaasp_c + asp_dsh_L_c + atp_c --> amp_c + ppi_c + asptrna_c h2o_c + asp_dsh_L_p + atp_c --> adp_c + pi_c + asp_dsh_L_c + h_c asp_dsh_L_p + 2.0 h_p --> asp_dsh_L_c + 2.0 h_c asp_dsh_L_p + 3.0 h_p --> asp_dsh_L_c + 3.0 h_c asp_dsh_L_p + h_p --> asp_dsh_L_c + h_c asp_dsh_L_p + h_p <=> asp_dsh_L_c + h_c asp_dsh_L_e <=> asp_dsh_L_p aso4_c + 2.0 gthrd_c --> h2o_c + aso3_c + gthox_c arg_dsh_L_c + succoa_c --> sucarg_c + coa_c + h_c nadp_c + athr_dsh_L_c <=> 2aobut_c + nadph_c + h_c h2o_c + atp_c + h_c --> nh4_c + itp_c h2o_c + atp_c --> adp_c + pi_c + h_c atp_c + prpp_c --> prbatp_c + ppi_c adp_c + pi_c + 4.0 h_p <=> 3.0 h_c + h2o_c + atp_c h_p + ala_dsh_B_p --> h_c + ala_dsh_B_c ala_dsh_B_e <=> ala_dsh_B_p nad_c + h2o_c + betald_c --> nadh_c + glyb_c + 2.0 h_c h2o_c + nadp_c + betald_c --> glyb_c + 2.0 h_c + nadph_c moco_c + mptamp_c --> bmoco_c + amp_c + cu2_c bmoco_c + gtp_c + h_c --> bmoco1gdp_c + ppi_c gtp_c + bmoco1gdp_c + h_c --> bmocogdp_c + ppi_c h2o_c + pap_c --> amp_c + pi_c btnso_c + nadh_c + h_c --> nad_c + btn_c + h2o_c btnso_c + h_c + nadph_c --> h2o_c + btn_c + nadp_c h_p + btn_p --> h_c + btn_c btn_e <=> btn_p amet_c + dtbt_c + 2fe2s_c --> 2fe1s_c + h_c + btn_c + dad_dsh_5_c + met_dsh_L_c but_c + accoa_c --> ac_c + btcoa_c butso3_p + h2o_c + atp_c --> adp_c + pi_c + h_c + butso3_c butso3_e <=> butso3_p h_p + but_p <=> but_c + h_c but_e <=> but_p gtp_c + bwco_c + h_c --> bwco1gdp_c + ppi_c bwco1gdp_c + gtp_c + h_c --> bwcogdp_c + ppi_c mptamp_c + wco_c --> bwco_c + amp_c + cu2_c ca2_c + h_p --> h_c + ca2_p ca2_e <=> ca2_p h_p + 15dap_c + lys_dsh_L_p --> lys_dsh_L_c + h_c + 15dap_p 2.0 h2o2_c --> 2.0 h2o_c + o2_c ca2_c + na1_p <=> na1_c + ca2_p atp_c + cbi_c + h_c <=> pppi_c + adocbi_c h_p + cbi_e --> h_c + cbi_p h2o_c + atp_c + cbi_p --> adp_c + pi_c + h_c + cbi_c cbl1_p + h2o_c + atp_c --> adp_c + pi_c + cbl1_c + h_c h_p + cbl1_e --> h_c + cbl1_p atp_c + h_c + cbl1_c <=> pppi_c + adocbl_c cbm_c + 2.0 h_c --> nh4_c + co2_c nh4_c + atp_c + co2_c <=> adp_c + 2.0 h_c + cbp_c 2.0 atp_c + h2o_c + hco3_c + gln_dsh_L_c --> 2.0 adp_c + pi_c + 2.0 h_c + cbp_c + glu_dsh_L_c cdg_c + nh4_c + atp_c --> adp_c + pi_c + h_c + preq0_c + h2o_c h2o_c + atp_c + cd2_c --> adp_c + pi_c + h_c + cd2_p h_p + cd2_c --> cd2_p + h_c cd2_e <=> cd2_p cd2_p --> cd2_c h2o_c + cdpdddecg_c --> cmp_c + 2.0 h_c + pa120_c h2o_c + cdpdtdecg_c --> cmp_c + 2.0 h_c + pa140_c h2o_c + cdpdtdec7eg_c --> pa141_c + cmp_c + 2.0 h_c h2o_c + cdpdhdecg_c --> cmp_c + pa160_c + 2.0 h_c h2o_c + cdpdhdec9eg_c --> cmp_c + pa161_c + 2.0 h_c h2o_c + cdpdodecg_c --> cmp_c + 2.0 h_c + pa180_c h2o_c + cdpdodec11eg_c --> cmp_c + pa181_c + 2.0 h_c preq0_c + 2.0 nadph_c + 3.0 h_c --> 2.0 nadp_c + preq1_c h_c + cph4_c --> cdg_c + nh4_c atp_c + 4c2me_c --> 2p4c2me_c + adp_c + h_c pe161_c + 2.0 amet_c --> 2.0 ahcys_c + 2.0 h_c + cpe160_c 2.0 amet_c + pg161_c --> 2.0 ahcys_c + 2.0 h_c + cpg160_c pe181_c + 2.0 amet_c --> 2.0 ahcys_c + 2.0 h_c + cpe180_c 2.0 amet_c + pg181_c --> 2.0 ahcys_c + cpg180_c + 2.0 h_c cgly_p + h2o_c + atp_c --> adp_c + cgly_c + h_c + pi_c cgly_e <=> cgly_p h2o_c + atp_c + chol_p --> adp_c + pi_c + h_c + chol_c h_p + chol_p --> chol_c + h_c chol_e <=> chol_p chol_c + nad_c --> nadh_c + h_c + betald_c chor_c --> pphn_c 3psme_c --> chor_c + pi_c chor_c --> pyr_c + 4hbz_c chtbs_p + pep_c --> chtbs6p_c + pyr_c chtbs_e <=> chtbs_p nadh_c + h_c + o2_c + cinnm_c --> cenchddd_c + nad_c cit_c --> ac_c + oaa_c h_p + cit_c --> cit_p + h_c cit_p + succ_c --> cit_c + succ_p cit_e <=> cit_p lipa_cold_p + h2o_c + atp_c --> adp_c + pi_c + h_c + lipa_cold_e h2o_p + clpn120_p --> pg120_p + h_p + pa120_p h2o_p + clpn140_p --> pa140_p + h_p + pg140_p clpn141_p + h2o_p --> h_p + pg141_p + pa141_p clpn160_p + h2o_p --> pa160_p + h_p + pg160_p clpn161_p + h2o_p --> pg161_p + h_p + pa161_p clpn180_p + h2o_p --> pg180_p + h_p + pa180_p clpn181_p + h2o_p --> pg181_p + pa181_p + h_p 2.0 pg120_p <=> glyc_p + clpn120_p 2.0 pg140_p <=> glyc_p + clpn140_p 2.0 pg141_p <=> glyc_p + clpn141_p 2.0 pg160_p <=> glyc_p + clpn160_p 2.0 pg161_p <=> clpn161_p + glyc_p 2.0 pg180_p <=> glyc_p + clpn180_p 2.0 pg181_p <=> clpn181_p + glyc_p 2.0 cl_p + h_c --> h_p + 2.0 cl_c cl_e <=> cl_p h2o_c + cmp_c --> csn_c + r5p_c cmp_e <=> cmp_p cm_e <=> cm_p h_p + cm_p --> h_c + cm_e co2_e <=> co2_p co2_p <=> co2_c h2o_c + atp_c + cobalt2_c --> adp_c + cobalt2_p + h_c + pi_c h_p + cobalt2_c --> cobalt2_p + h_c cobalt2_e <=> cobalt2_p cobalt2_p --> cobalt2_c udcpdp_p + colipa_p --> colipap_p + udcpp_p colipap_p + atp_c + h2o_c --> adp_c + pi_c + h_c + colipap_e h2o_c + atp_c + colipa_c --> adp_c + pi_c + h_c + colipa_p colipa_p + h2o_c + atp_c --> pi_c + h_c + adp_c + colipa_e fadh2_c + 2.0 cpgn_c --> fad_c + 2.0 h_c + 2.0 cpgn_dsh_un_c + 2.0 fe2_c fmnh2_c + 2.0 cpgn_c --> fmn_c + 2.0 h_c + 2.0 cpgn_dsh_un_c + 2.0 fe2_c rbflvrd_c + 2.0 cpgn_c --> ribflv_c + 2.0 h_c + 2.0 cpgn_dsh_un_c + 2.0 fe2_c h_p + cpgn_dsh_un_p --> cpgn_dsh_un_e + h_c cpgn_dsh_un_c + h_p --> h_c + cpgn_dsh_un_p cpgn_p + h2o_c + atp_c --> adp_c + pi_c + h_c + cpgn_c cpgn_dsh_un_e + fe3_e --> cpgn_e h_p + cpgn_e --> cpgn_p + h_c ahdt_c + h2o_c --> h_c + cph4_c + acald_c + pppi_c h2o_c + gtp_c --> cpmp_c + ppi_c cpppg3_c + o2_c + 2.0 h_c --> 2.0 co2_c + 2.0 h2o_c + pppg9_c cpppg3_c + 2.0 amet_c --> 2.0 co2_c + pppg9_c + 2.0 dad_dsh_5_c + 2.0 met_dsh_L_c crn_c + bbtcoa_c <=> crncoa_c + gbbtn_c crn_c + atp_c + coa_c --> adp_c + pi_c + crncoa_c crncoa_c <=> crnDcoa_c crn_c + ctbtcoa_c <=> ctbt_c + crncoa_c crncoa_c <=> h2o_c + ctbtcoa_c crn_dsh_D_c + atp_c + coa_c --> crnDcoa_c + pi_c + adp_c h2o_c + crn_dsh_D_p + atp_c --> adp_c + crn_dsh_D_c + pi_c + h_c crn_dsh_D_p + h_p <=> crn_dsh_D_c + h_c crn_dsh_D_e <=> crn_dsh_D_p crn_p + h2o_c + atp_c --> adp_c + pi_c + crn_c + h_c h_p + crn_p <=> crn_c + h_c gbbtn_c + crn_p --> crn_c + gbbtn_p crn_dsh_D_c + crn_p --> crn_dsh_D_p + crn_c crn_e <=> crn_p h2o_c + accoa_c + oaa_c --> cit_c + coa_c + h_c h2o_c + h_c + csn_c --> nh4_c + ura_c csn_p + h_p --> h_c + csn_c csn_e <=> csn_p ctbt_c + atp_c + coa_c --> adp_c + pi_c + ctbtcoa_c h2o_c + ctbt_p + atp_c --> adp_c + pi_c + h_c + ctbt_c ctbt_p + h_p <=> ctbt_c + h_c tdecoa_c <=> td2coa_c hdcoa_c <=> hdd2coa_c odecoa_c <=> od2coa_c utp_c + h2o_c + atp_c + gln_dsh_L_c --> adp_c + pi_c + ctp_c + glu_dsh_L_c + 2.0 h_c 4.0 h_p + 4.0 cu_p + o2_p --> 4.0 cu2_p + 2.0 h2o_p cu_c + h2o_c + atp_c --> adp_c + cu_p + pi_c + h_c h2o_c + cu2_c + atp_c --> adp_c + pi_c + h_c + cu2_p cu2_e <=> cu2_p cu2_p --> cu2_c cu_c + h_e --> h_c + cu_e cu_e <=> cu_p tsul_c + cyan_c --> so3_c + tcynt_c + h_c tsul_p + cyan_p --> h_p + so3_p + tcynt_p cyan_e <=> cyan_p cynt_c + hco3_c + 3.0 h_c --> 2.0 co2_c + nh4_c cynt_p + h_p --> cynt_c + h_c cynt_e <=> cynt_p h2o_c + cys_dsh_D_c --> nh4_c + h2s_c + pyr_c h2o_c + cys_dsh_L_c --> pyr_c + nh4_c + h2s_c cys_dsh_D_p + h2o_c + atp_c --> cys_dsh_D_c + pi_c + h_c + adp_c cys_dsh_D_e <=> cys_dsh_D_p acser_c + h2s_c --> cys_dsh_L_c + ac_c + h_c 3sala_c + 2.0 h_c --> so2_c + ala_dsh_L_c h2o_c + cyst_dsh_L_c --> pyr_c + nh4_c + hcys_dsh_L_c trnacys_c + atp_c + cys_dsh_L_c --> cystrna_c + amp_c + ppi_c h2o_c + atp_c + cys_dsh_L_c --> adp_c + pi_c + h_c + cys_dsh_L_p h2o_c + atp_c + cys_dsh_L_p --> adp_c + pi_c + h_c + cys_dsh_L_c cys_dsh_L_e <=> cys_dsh_L_p cys_dsh_L_c --> cys_dsh_L_p 0.5 o2_c + 2.0 h_c + mql8_c --> 2.0 h_p + mqn8_c + h2o_c q8h2_c + 0.5 o2_c + 2.0 h_c --> 2.0 h_p + h2o_c + q8_c q8h2_c + 0.5 o2_c + 4.0 h_c --> 4.0 h_p + h2o_c + q8_c h2o_c + cytd_c + h_c --> uri_c + nh4_c h2o_c + cytd_c --> rib_dsh_D_c + csn_c gtp_c + cytd_c --> gdp_c + cmp_c + h_c h_p + cytd_p --> cytd_c + h_c h_p + cytd_p <=> cytd_c + h_c cytd_e <=> cytd_p cmp_c + atp_c <=> adp_c + cdp_c dcmp_c + atp_c <=> adp_c + dcdp_c h_p + lac_dsh_D_p <=> lac_dsh_D_c + h_c lac_dsh_D_e <=> lac_dsh_D_p h2o_c + fad_c + ala_dsh_D_c --> fadh2_c + pyr_c + nh4_c h2o_c + h_c + dad_dsh_2_c --> din_c + nh4_c damp_c + atp_c <=> adp_c + dadp_c dad_dsh_2_p + h_p --> dad_dsh_2_c + h_c dad_dsh_2_e <=> dad_dsh_2_p atp_c + 12dgr120_c --> adp_c + h_c + pa120_c 12dgr140_c + atp_c --> adp_c + h_c + pa140_c 12dgr141_c + atp_c --> adp_c + h_c + pa141_c atp_c + 12dgr160_c --> adp_c + h_c + pa160_c 12dgr161_c + atp_c --> adp_c + pa161_c + h_c 12dgr180_c + atp_c --> adp_c + h_c + pa180_c atp_c + 12dgr181_c --> pa181_c + adp_c + h_c h_p + ala_dsh_D_p --> h_c + ala_dsh_D_c ala_dsh_D_e <=> ala_dsh_D_p damp_e <=> damp_p h2o_c + 23dappa_c --> pyr_c + 2.0 nh4_c 26dap_dsh_M_c + h_c --> lys_dsh_L_c + co2_c 26dap_dsh_LL_c <=> 26dap_dsh_M_c h2o_c + atp_c + 26dap_dsh_M_p --> adp_c + pi_c + h_c + 26dap_dsh_M_c 15dap_e <=> 15dap_p pa120_c + h_c + ctp_c --> cdpdddecg_c + ppi_c pa140_c + h_c + ctp_c --> cdpdtdecg_c + ppi_c pa141_c + ctp_c + h_c --> cdpdtdec7eg_c + ppi_c pa160_c + h_c + ctp_c --> cdpdhdecg_c + ppi_c pa161_c + h_c + ctp_c --> cdpdhdec9eg_c + ppi_c ctp_c + h_c + pa180_c --> cdpdodecg_c + ppi_c pa181_c + ctp_c + h_c --> ppi_c + cdpdodec11eg_c h2o_c + datp_c + h_c --> ditp_c + nh4_c ru5p_dsh_D_c --> for_c + h_c + db4p_c co2_c + dann_c + atp_c --> dtbt_c + pi_c + 3.0 h_c + adp_c chtbs6p_c + h2o_c --> acgam_c + acgam6p_c dca_e <=> dca_p dcmp_e <=> dcmp_p h2o_c + dctp_c + h_c --> nh4_c + dutp_c h2o_c + dcyt_c + h_c --> nh4_c + duri_c dcyt_p + h_p --> dcyt_c + h_c dcyt_e <=> dcyt_p ddca_e --> ddca_p atp_c + 2dh3dgal_c --> adp_c + 2dh3dgal6p_c + h_c h_p + 2ddglcn_p <=> 2ddglcn_c + h_c 2ddglcn_e <=> 2ddglcn_p 2ddglcn_c + atp_c --> 2ddg6p_c + adp_c + h_c h2o_c + pep_c + e4p_c --> pi_c + 2dda7p_c 2dh3dgal6p_c <=> pyr_c + g3p_c dgmp_c + atp_c <=> dgdp_c + adp_c dgmp_e <=> dgmp_p h_p + dgsn_p --> dgsn_c + h_c dgsn_e <=> dgsn_p 23dhacoa_c + h2o_c <=> 3hadpcoa_c 23dhmb_c --> h2o_c + 3mob_c 23dhmp_c --> h2o_c + 3mop_c dha_c + pep_c --> pyr_c + dhap_c dha_e <=> dha_p dha_p <=> dha_c nad_c + 23ddhb_c <=> nadh_c + 23dhb_c + h_c 23dhb_c + atp_c + h_c --> 23dhba_c + ppi_c h2o_c + 23dhbzs_c --> ser_dsh_L_c + 23dhb_c cenchddd_c + nad_c --> nadh_c + dhcinnm_c + h_c dhcinnm_c + o2_c --> hkntd_c + h_c 23dhdp_c + h_c + nadph_c --> nadp_c + thdp_c pyr_c + aspsa_c --> 23dhdp_c + h_c + 2.0 h2o_c dhf_c + nadph_c + h_c <=> nadp_c + thf_c dhpt_c + glu_dsh_L_c + atp_c --> adp_c + pi_c + h_c + dhf_c h_c + nadph_c + dhmpt_c --> nadp_c + thmnp_c octdp_c + dhna_c + h_c --> co2_c + ppi_c + 2dmmql8_c sbzcoa_c + h_c --> h2o_c + 14dhncoa_c h2o_c + 14dhncoa_c --> coa_c + dhna_c + h_c dhnpt_c <=> 6hmhpt_c + gcald_c dhnpt_c <=> dhmpt_c q8_c + dhor_dsh_S_c --> q8h2_c + orot_c mqn8_c + dhor_dsh_S_c --> orot_c + mql8_c dhor_dsh_S_c + fum_c --> succ_c + orot_c h2o_c + dhor_dsh_S_c <=> h_c + cbasp_c nad_c + cechddd_c --> nadh_c + dhpppn_c + h_c h2o_c + 25drapp_c + h_c --> 5apru_c + nh4_c 6hmhptpp_c + 4abz_c --> dhpt_c + ppi_c dhptd_c --> mdhdhf_c dhptdn_c + 3.0 h_c + nadph_c --> nadp_c + thptdn_c nadh_c + dhptdn_c + 3.0 h_c --> nad_c + thptdn_c ahdt_c <=> dhmptp_c 2dda7p_c --> 3dhq_c + pi_c 3dhq_c --> h2o_c + 3dhsk_c dimp_e <=> dimp_p h_p + din_p --> din_c + h_c din_e <=> din_p 25dkglcn_c + h_c + nadph_c --> nadp_c + 2dhguln_c 25dkglcn_c + nadh_c + h_c --> nad_c + 5dglcn_c 25dkglcn_c + h_c + nadph_c --> nadp_c + 5dglcn_c dmpp_c + ipdp_c --> grdp_c + ppi_c nadh_c + h_c + h2mb4p_c --> dmpp_c + nad_c + h2o_c 2omhmbl_c + amet_c --> q8h2_c + ahcys_c + h_c dmso_c + mql8_c --> h2o_c + dms_c + mqn8_c dmso_p + mql8_c --> dms_p + h2o_p + mqn8_c 2dmmql8_c + dmso_c --> h2o_c + 2dmmq8_c + dms_c dmso_p + 2dmmql8_c --> dms_p + h2o_p + 2dmmq8_c dmso_e <=> dmso_p dmso_p <=> dmso_c dms_e <=> dms_p h2o_c + dhpmp_c --> dhnpt_c + pi_c h2o_c + ahdt_c --> dhpmp_c + h_c + ppi_c nadh_c + h_c + 23doguln_c --> nad_c + 3dhguln_c dopa_e <=> dopa_p doxrbcn_e <=> doxrbcn_p doxrbcn_p + h_p --> doxrbcn_e + h_c dpcoa_c + atp_c --> adp_c + coa_c + h_c h_c + 2dhp_c + nadph_c --> nadp_c + pant_dsh_R_c 2dr5p_c --> g3p_c + acald_c q8_c + dsbard_p --> q8h2_c + dsbaox_p mqn8_c + dsbard_p --> dsbaox_p + mql8_c dsbcox_p + 2.0 gthrd_p --> dsbcrd_p + gthox_p trdrd_c + dsbdox_c --> dsbdrd_c + trdox_c dsbgox_p + 2.0 gthrd_p --> dsbgrd_p + gthox_p nadp_c + ser_dsh_D_c <=> 2amsa_c + h_c + nadph_c h_p + ser_dsh_D_p --> ser_dsh_D_c + h_c ser_dsh_D_e <=> ser_dsh_D_p tartr_dsh_D_c --> h2o_c + oaa_c atp_c + dtmp_c <=> adp_c + dtdp_c dtmp_e <=> dtmp_p dump_e <=> dump_p nad_c + 56dura_c <=> nadh_c + h_c + ura_c atp_c + duri_c --> adp_c + dump_c + h_c duri_c + pi_c <=> 2dr1p_c + ura_c duri_p + h_p --> duri_c + h_c duri_e <=> duri_p h2o_c + dutp_c --> dump_c + h_c + ppi_c dxyl5p_c + h_c + nadph_c --> nadp_c + 2me4p_c pyr_c + g3p_c + h_c --> dxyl5p_c + co2_c dxyl_c + atp_c --> adp_c + dxyl5p_c + h_c nad_c + h2o_c + e4p_c <=> nadh_c + 2.0 h_c + 4per_c nadh_c + tdec2eACP_c + h_c --> nad_c + dcaACP_c tdec2eACP_c + h_c + nadph_c --> nadp_c + dcaACP_c nadh_c + h_c + tddec2eACP_c --> nad_c + ddcaACP_c nadph_c + h_c + tddec2eACP_c --> nadp_c + ddcaACP_c nadh_c + h_c + t3c5ddeceACP_c --> cddec5eACP_c + nad_c nadph_c + h_c + t3c5ddeceACP_c --> cddec5eACP_c + nadp_c nadh_c + tmrs2eACP_c + h_c --> nad_c + myrsACP_c tmrs2eACP_c + h_c + nadph_c --> nadp_c + myrsACP_c nadh_c + t3c7mrseACP_c + h_c --> nad_c + tdeACP_c t3c7mrseACP_c + h_c + nadph_c --> nadp_c + tdeACP_c nadh_c + tpalm2eACP_c + h_c --> palmACP_c + nad_c tpalm2eACP_c + h_c + nadph_c --> nadp_c + palmACP_c nadh_c + t3c9palmeACP_c + h_c --> nad_c + hdeACP_c t3c9palmeACP_c + h_c + nadph_c --> nadp_c + hdeACP_c nadh_c + toctd2eACP_c + h_c --> nad_c + ocdcaACP_c toctd2eACP_c + h_c + nadph_c --> nadp_c + ocdcaACP_c nadh_c + t3c11vaceACP_c + h_c --> nad_c + octeACP_c t3c11vaceACP_c + h_c + nadph_c --> nadp_c + octeACP_c but2eACP_c + nadh_c + h_c --> nad_c + butACP_c but2eACP_c + h_c + nadph_c --> nadp_c + butACP_c nadh_c + thex2eACP_c + h_c --> hexACP_c + nad_c thex2eACP_c + h_c + nadph_c --> hexACP_c + nadp_c nadh_c + h_c + toct2eACP_c --> nad_c + ocACP_c h_c + nadph_c + toct2eACP_c --> nadp_c + ocACP_c atp_c + h2o_c + eca4colipa_p --> adp_c + pi_c + h_c + eca4colipa_e eca4und_p + colipa_p --> udcpdp_p + h_p + eca4colipa_p 2.0 unagamuf_p --> udcpdp_p + h_p + eca2und_p eca2und_p + unagamuf_p --> udcpdp_p + h_p + eca3und_p unagamuf_p + eca3und_p --> udcpdp_p + eca4und_p + h_p unagamuf_c --> unagamuf_p 3hbcoa_c <=> h2o_c + b2coa_c 3hhcoa_c <=> h2o_c + hx2coa_c 3hocoa_c <=> h2o_c + oc2coa_c 3hdcoa_c <=> dc2coa_c + h2o_c 3hddcoa_c <=> h2o_c + dd2coa_c 3htdcoa_c <=> h2o_c + td2coa_c 3hhdcoa_c <=> h2o_c + hdd2coa_c 3hodcoa_c <=> h2o_c + od2coa_c 2ddg6p_c --> g3p_c + pyr_c 6pgc_c --> h2o_c + 2ddg6p_c kdo2lipid4_c + ddcaACP_c --> ACP_c + kdo2lipid4L_c myrsACP_c + kdo2lipid4L_c --> lipa_c + ACP_c kdo2lipid4_c + hdeACP_c --> ACP_c + kdo2lipid4p_c kdo2lipid4p_c + myrsACP_c --> ACP_c + lipa_cold_c egmeACP_c + h_c + nadph_c --> nadp_c + gmeACP_c atp_c + h2o_c + enlipa_p --> adp_c + pi_c + h_c + enlipa_e 2pg_c <=> h2o_c + pep_c 3.0 seramp_c + 3.0 23dhba_c --> 6.0 amp_c + 9.0 h_c + enter_c 3.0 h2o_c + enter_c --> 3.0 23dhbzs_c + 3.0 h_c 3.0 h2o_c + feenter_c --> 3.0 23dhbzs_c + fe3_c + 3.0 h_c h_c + nadph_c + epmeACP_c --> nadp_c + pmeACP_c etha_c --> nh4_c + acald_c h_p + etha_p --> etha_c + h_c etha_e <=> etha_p ethso3_p + h2o_c + atp_c --> pi_c + h_c + ethso3_c + adp_c ethso3_e <=> ethso3_p etoh_e <=> etoh_p etoh_p <=> etoh_c f6p_c <=> dha_c + g3p_c h2o_c + f6p_c --> fru_c + pi_c 2.0 pi_c + f6p_p --> 2.0 pi_p + f6p_c f6p_e <=> f6p_p h2o_c + dcaACP_c --> dca_c + ACP_c + h_c h2o_c + ddcaACP_c --> ACP_c + h_c + ddca_c h2o_c + myrsACP_c --> ACP_c + h_c + ttdca_c h2o_c + tdeACP_c --> ACP_c + ttdcea_c + h_c h2o_c + palmACP_c --> ACP_c + hdca_c + h_c h2o_c + hdeACP_c --> ACP_c + h_c + hdcea_c h2o_c + ocACP_c --> octa_c + ACP_c + h_c h2o_c + dcacoa_c --> dca_c + coa_c + h_c h2o_c + ddcacoa_c --> coa_c + ddca_c + h_c h2o_c + tdcoa_c --> coa_c + h_c + ttdca_c h2o_c + tdecoa_c --> ttdcea_c + h_c + coa_c h2o_c + pmtcoa_c --> hdca_c + coa_c + h_c h2o_c + hdcoa_c --> hdcea_c + h_c + coa_c h2o_c + stcoa_c --> ocdca_c + coa_c + h_c h2o_c + odecoa_c --> ocdcea_c + coa_c + h_c h2o_c + hxcoa_c --> coa_c + h_c + hxa_c h2o_c + occoa_c --> octa_c + coa_c + h_c h_p + atp_c + dca_p + coa_c --> amp_c + h_c + ppi_c + dcacoa_c h_p + ddca_p + atp_c + coa_c --> ddcacoa_c + ppi_c + amp_c + h_c ttdca_p + h_p + atp_c + coa_c --> amp_c + h_c + ppi_c + tdcoa_c h_p + atp_c + coa_c + ttdcea_p --> amp_c + h_c + ppi_c + tdecoa_c atp_c + hdca_p + h_p + coa_c --> pmtcoa_c + amp_c + h_c + ppi_c h_p + hdcea_p + atp_c + coa_c --> amp_c + h_c + ppi_c + hdcoa_c h_p + atp_c + coa_c + ocdca_p --> amp_c + h_c + ppi_c + stcoa_c h_p + atp_c + coa_c + ocdcea_p --> amp_c + h_c + ppi_c + odecoa_c h_p + atp_c + hxa_p + coa_c --> hxcoa_c + amp_c + h_c + ppi_c h_p + atp_c + coa_c + octa_p --> amp_c + h_c + ppi_c + occoa_c nadh_c + h_c + fad_c --> fadh2_c + nad_c fad_c + h_c + nadph_c --> nadp_c + fadh2_c nad_c + hmgth_c <=> nadh_c + h_c + Sfglutth_c fald_e <=> fald_p fald_p <=> fald_c fald_c + gthrd_c <=> hmgth_c fdp_c <=> g3p_c + dhap_c s17bp_c <=> e4p_c + dhap_c h2o_c + fdp_c --> f6p_c + pi_c fuc_dsh_L_c <=> fcl_dsh_L_c atp_c + fcl_dsh_L_c --> adp_c + fc1p_c + h_c fc1p_c <=> dhap_c + lald_dsh_L_c fe2_c + ppp9_c --> pheme_c + 2.0 h_c 2.0 h_c + q8_c + for_p --> q8h2_c + co2_p + h_p mqn8_c + 2.0 h_c + for_p --> co2_p + mql8_c + h_p o2_c + fmnh2_c + isetac_c --> fmn_c + h_c + h2o_c + gcald_c + so3_c o2_c + fmnh2_c + mso3_c --> fald_c + fmn_c + h_c + h2o_c + so3_c o2_c + fmnh2_c + ethso3_c --> fmn_c + h_c + acald_c + h2o_c + so3_c o2_c + fmnh2_c + butso3_c --> fmn_c + h_c + h2o_c + so3_c + btal_c o2_c + sulfac_c + fmnh2_c --> fmn_c + h_c + h2o_c + glx_c + so3_c atp_c + h2o_c + fe2_p --> adp_c + pi_c + h_c + fe2_c fe2_p + h_p --> fe2_c + h_c h_p + fe2_c --> fe2_p + h_c fe2_e <=> fe2_p fe2_p --> fe2_c fe3dcit_p + h2o_c + atp_c --> adp_c + pi_c + 2.0 cit_c + fe3_c + h_c fe3dcit_e + h_p --> fe3dcit_p + h_c fe3dhbzs_c --> 23dhbzs_c + fe3_c h2o_c + atp_c + fe3dhbzs_p --> adp_c + pi_c + h_c + fe3dhbzs_c h_p + fe3dhbzs_e --> h_c + fe3dhbzs_p fadh2_c + 2.0 fe3hox_c --> fad_c + 2.0 h_c + 2.0 fe2_c + 2.0 fe3hox_dsh_un_c fmnh2_c + 2.0 fe3hox_c --> fmn_c + 2.0 h_c + 2.0 fe2_c + 2.0 fe3hox_dsh_un_c rbflvrd_c + 2.0 fe3hox_c --> ribflv_c + 2.0 h_c + 2.0 fe2_c + 2.0 fe3hox_dsh_un_c h_p + fe3hox_dsh_un_c --> h_c + fe3hox_dsh_un_p h_p + fe3hox_dsh_un_p --> fe3hox_dsh_un_e + h_c fe3hox_p + h2o_c + atp_c --> adp_c + pi_c + h_c + fe3hox_c fe3hox_dsh_un_e + fe3_e --> fe3hox_e h_p + fe3hox_e --> fe3hox_p + h_c fadh2_c + 2.0 fe3_c --> fad_c + 2.0 fe2_c + 2.0 h_c fe3_p + h2o_c + atp_c --> adp_c + pi_c + h_c + fe3_c fe3_e <=> fe3_p 2.0 fecrm_c + fadh2_c --> 2.0 fecrm_dsh_un_c + 2.0 h_c + fad_c + 2.0 fe2_c 2.0 fecrm_c + fmnh2_c --> fmn_c + 2.0 fecrm_dsh_un_c + 2.0 h_c + 2.0 fe2_c rbflvrd_c + 2.0 fecrm_c --> 2.0 fecrm_dsh_un_c + 2.0 h_c + 2.0 fe2_c + ribflv_c h_p + fecrm_dsh_un_p --> fecrm_dsh_un_e + h_c h_p + fecrm_dsh_un_c --> h_c + fecrm_dsh_un_p h2o_c + atp_c + fecrm_p --> adp_c + pi_c + h_c + fecrm_c fe3_e + fecrm_dsh_un_e --> fecrm_e fecrm_e + h_p --> fecrm_p + h_c 2.0 feenter_c + fadh2_c --> fad_c + 2.0 h_c + 2.0 enter_c + 2.0 fe2_c 2.0 feenter_c + fmnh2_c --> fmn_c + 2.0 h_c + 2.0 enter_c + 2.0 fe2_c rbflvrd_c + 2.0 feenter_c --> ribflv_c + 2.0 h_c + 2.0 enter_c + 2.0 fe2_c h2o_c + feenter_p + atp_c --> adp_c + pi_c + h_c + feenter_c enter_e + fe3_e --> feenter_e enter_p + h_p --> enter_e + h_c h_p + feenter_e --> feenter_p + h_c h_p + enter_c --> enter_p + h_c fadh2_c + 2.0 feoxam_c --> fad_c + 2.0 h_c + 2.0 fe2_c + 2.0 feoxam_dsh_un_c fmnh2_c + 2.0 feoxam_c --> fmn_c + 2.0 h_c + 2.0 fe2_c + 2.0 feoxam_dsh_un_c rbflvrd_c + 2.0 feoxam_c --> ribflv_c + 2.0 h_c + 2.0 fe2_c + 2.0 feoxam_dsh_un_c h_p + feoxam_dsh_un_p --> feoxam_dsh_un_e + h_c h_p + feoxam_dsh_un_c --> feoxam_dsh_un_p + h_c feoxam_p + h2o_c + atp_c --> pi_c + h_c + feoxam_c + adp_c feoxam_dsh_un_e + fe3_e --> feoxam_e feoxam_e + h_p --> feoxam_p + h_c 4.0 fe2_p + 4.0 h_p + o2_p --> 4.0 fe3_p + 2.0 h2o_p 2.0 h_c + h2o2_c + 2.0 4fe4s_c --> 2.0 3fe4s_c + 2.0 h2o_c + 2.0 fe3_c 2.0 no_c + 2.0 h_c + 2.0 4fe4s_c --> 2.0 3fe4s_c + n2o_c + h2o_c + 2.0 fe3_c 3fe4s_c + fe2_c --> 4fe4s_c h2o_c + suc6p_c --> g6p_c + fru_c for_c + h_c --> h2_c + co2_c 2.0 flxso_c + nadph_c --> nadp_c + 2.0 flxr_c + h_c ribflv_c + h_c + nadph_c --> nadp_c + rbflvrd_c nadh_c + ribflv_c + h_c --> rbflvrd_c + nad_c 10fthf_c + mettrna_c --> h_c + thf_c + fmettrna_c fmn_c + atp_c + h_c --> fad_c + ppi_c nadh_c + fmn_c + h_c --> fmnh2_c + nad_c fmn_c + h_c + nadph_c --> nadp_c + fmnh2_c 5fthf_c + h_c --> h2o_c + methf_c forcoa_c + oxa_c <=> oxalcoa_c + for_c h_p + for_p --> for_c + h_c for_e <=> for_p for_c --> for_p fum_c + mql8_c --> succ_c + mqn8_c 2dmmql8_c + fum_c --> succ_c + 2dmmq8_c atp_c + f1p_c --> adp_c + h_c + fdp_c h2o_c + frulysp_c <=> g6p_c + lys_dsh_L_c psclys_c <=> frulys_c frulys_c + atp_c --> adp_c + h_c + frulysp_c h_p + frulys_p --> h_c + frulys_c frulys_e <=> frulys_p fruur_p + h_p <=> fruur_c + h_c fruur_e <=> fruur_p fru_p + pep_c --> pyr_c + f6p_c pep_c + fru_p --> pyr_c + f1p_c fru_e <=> fru_p h2o_c + 10fthf_c --> for_c + h_c + thf_c for_c + atp_c + thf_c --> 10fthf_c + pi_c + adp_c fuc_dsh_L_e <=> fuc_dsh_L_p h_p + fuc_dsh_L_p <=> fuc_dsh_L_c + h_c h2o_c + fum_c <=> mal_dsh_L_c 2.0 h_p + fum_p --> 2.0 h_c + fum_c 3.0 h_p + fum_p --> 3.0 h_c + fum_c fum_e <=> fum_p fusa_e <=> fusa_p h_p + fusa_p --> h_c + fusa_e gam1p_c + accoa_c --> acgam1p_c + coa_c + h_c g1p_p + h2o_p --> pi_p + glc_dsh_D_p dttp_c + g1p_c + h_c --> dtdpglu_c + ppi_c g1p_e <=> g1p_p glu1sa_c <=> 5aop_c h2o_c + glyc2p_c --> glyc_c + pi_c glyc2p_p + h2o_p --> glyc_p + pi_p glyc3p_c + ddcaACP_c --> ACP_c + 1ddecg3p_c myrsACP_c + glyc3p_c --> ACP_c + 1tdecg3p_c glyc3p_c + tdeACP_c --> ACP_c + 1tdec7eg3p_c glyc3p_c + palmACP_c --> 1hdecg3p_c + ACP_c glyc3p_c + hdeACP_c --> ACP_c + 1hdec9eg3p_c ocdcaACP_c + glyc3p_c --> 1odecg3p_c + ACP_c octeACP_c + glyc3p_c --> ACP_c + 1odec11eg3p_c h2o_c + g3pc_p + atp_c --> adp_c + pi_c + h_c + g3pc_c g3pc_e <=> g3pc_p nadp_c + glyc3p_c <=> dhap_c + nadph_c + h_c glyc3p_c + q8_c --> q8h2_c + dhap_c glyc3p_c + mqn8_c --> dhap_c + mql8_c glyc3p_c + 2dmmq8_c --> dhap_c + 2dmmql8_c g3pe_p + h2o_c + atp_c --> adp_c + pi_c + h_c + g3pe_c g3pe_e <=> g3pe_p h2o_c + atp_c + g3pg_p --> adp_c + pi_c + h_c + g3pg_c g3pg_e <=> g3pg_p h2o_c + atp_c + g3pi_p --> adp_c + g3pi_c + pi_c + h_c g3pi_e <=> g3pi_p h2o_c + atp_c + g3ps_p --> adp_c + pi_c + h_c + g3ps_c g3ps_e <=> g3ps_p h2o_c + glyc3p_c --> glyc_c + pi_c glu5sa_c --> h2o_c + h_c + 1pyr5c_c h_c + nadph_c + glu5p_c --> pi_c + glu5sa_c + nadp_c h2o_c + gam6p_c --> nh4_c + f6p_c g6p_c + nadp_c <=> h_c + nadph_c + 6pgl_c g6p_c + h2o_c --> pi_c + glc_dsh_D_c 2.0 pi_c + g6p_p --> g6p_c + 2.0 pi_p g6p_e <=> g6p_p h2o_p + gal1p_p --> pi_p + gal_p gal1p_e <=> gal1p_p gal_dsh_bD_e <=> gal_dsh_bD_p galct_dsh_D_c --> 5dh4dglc_c + h2o_c galctn_dsh_L_c + nad_c --> nadh_c + h_c + tagur_c galctn_dsh_D_c --> h2o_c + 2dh3dgal_c galctn_dsh_L_p + h_p --> h_c + galctn_dsh_L_c galctn_dsh_L_e <=> galctn_dsh_L_p h_p + galctn_dsh_D_p --> h_c + galctn_dsh_D_c galctn_dsh_D_e <=> galctn_dsh_D_p h_p + galct_dsh_D_p <=> galct_dsh_D_c + h_c galct_dsh_D_e <=> galct_dsh_D_p gal_c + atp_c <=> gal1p_c + adp_c + h_c gal_dsh_bD_p --> gal_p h2o_c + melib_c --> glc_dsh_D_c + gal_c udpg_c + gicolipa_c --> udp_c + gagicolipa_c + h_c galt_p + pep_c --> galt1p_c + pyr_c galt_e <=> galt_p h_p + galur_p <=> galur_c + h_c galur_e <=> galur_p g1p_c + utp_c + h_c --> udpg_c + ppi_c h2o_c + atp_c + gal_p --> adp_c + gal_c + pi_c + h_c h_p + gal_p --> gal_c + h_c gal_e <=> gal_p gam6p_p + 2.0 pi_c --> gam6p_c + 2.0 pi_p gam6p_e <=> gam6p_p gam_p + pep_c --> gam6p_c + pyr_c gam_e <=> gam_p g3p_c + nad_c + pi_c <=> nadh_c + 13dpg_c + h_c 10fthf_c + gar_c <=> fgam_c + thf_c + h_c for_c + atp_c + gar_c --> adp_c + pi_c + h_c + fgam_c gbbtn_e <=> gbbtn_p nad_c + h2o_c + gcald_c --> nadh_c + 2.0 h_c + glyclt_c gdpddman_c --> gdpofuc_c gdp_c + atp_c --> ppgpp_c + amp_c + h_c h2o_c + gdpmann_c --> gdp_c + h_c + man_c h2o_c + gdpmann_c --> man1p_c + 2.0 h_c + gmp_c h2o_c + gdptp_c --> gtp_c + ppi_c gdp_e <=> gdp_p f6p_c + gln_dsh_L_c --> gam6p_c + glu_dsh_L_c ggbutal_c + h2o_c + nadp_c <=> 2.0 h_c + nadph_c + gg4abut_c h2o_c + gg4abut_c --> 4abut_c + glu_dsh_L_c h2o_c + o2_c + ggptrc_c --> h2o2_c + ggbutal_c + nh4_c ptrc_c + glu_dsh_L_c + atp_c --> adp_c + ggptrc_c + pi_c + h_c nadh_c + sucsal_c + h_c <=> nad_c + ghb_c ser_dsh_L_c + thf_c <=> h2o_c + gly_c + mlthf_c atp_c + gmp_c <=> gdp_c + adp_c glycogen_c --> bglycogen_c glc_dsh_D_c + accoa_c <=> acglc_dsh_D_c + coa_c glc_dsh_D_p + h2o_p + q8_c --> q8h2_c + h_p + glcn_p glcn_p + h_p <=> glcn_c + h_c glcn_e <=> glcn_p glycogen_c + pi_c --> g1p_c bglycogen_c + pi_c --> g1p_c 5dh4dglc_c --> pyr_c + 2h3oppan_c glcr_c --> 5dh4dglc_c + h2o_c glcr_p + h_p <=> h_c + glcr_c glcr_e <=> glcr_p adpglc_c --> adp_c + h_c + glycogen_c icolipa_c + udpg_c --> udp_c + h_c + gicolipa_c udpg_c + gagicolipa_c --> udp_c + h_c + ggagicolipa_c ggagicolipa_c + udpg_c --> udp_c + gggagicolipa_c + h_c glcur1p_e <=> glcur1p_p h_p + glcur_p <=> glcur_c + h_c glcur_e <=> glcur_p glc_dsh_D_p + h2o_c + atp_c --> adp_c + h_c + glc_dsh_D_c + pi_c glc_dsh_D_p + pep_c --> g6p_c + pyr_c h_p + glc_dsh_D_p --> glc_dsh_D_c + h_c glc_dsh_D_e <=> glc_dsh_D_p glc_dsh_D_e --> glc_dsh_D_p bglycogen_c --> glycogen_c atp_c + g1p_c + h_c --> adpglc_c + ppi_c glu_dsh_L_c + nh4_c + atp_c --> adp_c + pi_c + h_c + gln_dsh_L_c trnagln_c + atp_c + gln_dsh_L_c --> glntrna_c + amp_c + ppi_c h2o_c + atp_c + gln_dsh_L_p --> adp_c + pi_c + h_c + gln_dsh_L_c gln_dsh_L_e <=> gln_dsh_L_p nad_c + galt1p_c <=> nadh_c + h_c + tag6p_dsh_D_c glu_dsh_L_c + atp_c --> adp_c + glu5p_c 4abut_c + glu_dsh_L_p <=> 4abut_p + glu_dsh_L_c glu_dsh_L_c + atp_c + cys_dsh_L_c --> adp_c + pi_c + h_c + glucys_c glu_dsh_L_c + h_c --> co2_c + 4abut_c h2o_c + nadp_c + glu_dsh_L_c <=> h_c + nadph_c + nh4_c + akg_c h2o_c + gln_dsh_L_c --> glu_dsh_L_c + nh4_c h2o_p + gln_dsh_L_p --> glu_dsh_L_p + nh4_p h2o_c + prpp_c + gln_dsh_L_c --> pram_c + ppi_c + glu_dsh_L_c glu_dsh_D_c <=> glu_dsh_L_c h_c + nadph_c + akg_c + gln_dsh_L_c --> nadp_c + 2.0 glu_dsh_L_c glutrna_c + h_c + nadph_c --> nadp_c + trnaglu_c + glu1sa_c trnaglu_c + glu_dsh_L_c + atp_c --> amp_c + ppi_c + glutrna_c glu_dsh_L_p + h2o_c + atp_c --> pi_c + h_c + glu_dsh_L_c + adp_c glu_dsh_L_p + h_p <=> glu_dsh_L_c + h_c glu_dsh_L_p + na1_p --> na1_c + glu_dsh_L_c glu_dsh_L_e <=> glu_dsh_L_p 2.0 glx_c + h_c --> 2h3oppan_c + co2_c glyald_e <=> glyald_p glyald_p <=> glyald_c gly_c + accoa_c <=> 2aobut_c + coa_c h2o_c + atp_c + glyb_p --> glyb_c + adp_c + pi_c + h_c h_p + glyb_p --> glyb_c + h_c glyb_e <=> glyb_p glyc2p_p + h2o_c + atp_c --> adp_c + glyc2p_c + h_c + pi_c glyc2p_e <=> glyc2p_p h2o_c + atp_c + glyc3p_p --> adp_c + pi_c + h_c + glyc3p_c glyc3p_p + pi_c --> pi_p + glyc3p_c glyc3p_e <=> glyc3p_p h_p + glyc_dsh_R_p <=> h_c + glyc_dsh_R_c glyc_dsh_R_e <=> glyc_dsh_R_p glyc_c + nad_c --> nadh_c + dha_c + h_c atp_c + glyc_dsh_R_c --> 3pg_c + adp_c + h_c atp_c + glyc_dsh_R_c --> adp_c + h_c + 2pg_c gly_c + nad_c + thf_c --> nadh_c + mlthf_c + nh4_c + co2_c nadh_c + glx_c + h_c --> glyclt_c + nad_c glx_c + h_c + nadph_c --> nadp_c + glyclt_c h_p + glyclt_p <=> glyclt_c + h_c na1_p + glyclt_p --> na1_c + glyclt_c glyclt_e <=> glyclt_p glyclt_c + q8_c --> q8h2_c + glx_c glyclt_c + mqn8_c --> glx_c + mql8_c 2dmmq8_c + glyclt_c --> 2dmmql8_c + glx_c glyc_e <=> glyc_p glyc_c <=> glyc_p glyc_c + atp_c --> glyc3p_c + adp_c + h_c h2o_c + lgt_dsh_S_c --> lac_dsh_D_c + h_c + gthrd_c h2o_c + mthgxl_c --> lac_dsh_D_c + h_c gly_c + atp_c + trnagly_c --> glytrna_c + amp_c + ppi_c h_p + gly_p --> gly_c + h_c h_p + gly_p <=> gly_c + h_c na1_p + gly_p --> na1_c + gly_c gly_e <=> gly_p gdpmann_c --> h2o_c + gdpddman_c gmhep1p_c + atp_c + h_c --> adphep_dsh_DD_c + ppi_c gmhep7p_c + atp_c --> adp_c + h_c + gmhep17bp_c h2o_c + gmhep17bp_c --> gmhep1p_c + pi_c 2.0 h_c + nadph_c + gmp_c --> nadp_c + imp_c + nh4_c h2o_c + xmp_c + atp_c + gln_dsh_L_c --> amp_c + 2.0 h_c + ppi_c + glu_dsh_L_c + gmp_c gmp_e <=> gmp_p nadp_c + 6pgc_c --> co2_c + ru5p_dsh_D_c + nadph_c glcn_c + atp_c --> adp_c + h_c + 6pgc_c gdpofuc_c + h_c + nadph_c --> nadp_c + gdpfuc_c h2o_c + gp4g_c --> 2.0 gdp_c + 2.0 h_c h2o_c + g3pc_c --> glyc3p_c + h_c + chol_c g3pc_p + h2o_p --> glyc3p_p + h_p + chol_p h2o_c + g3pe_c --> etha_c + glyc3p_c + h_c h2o_p + g3pe_p --> glyc3p_p + h_p + etha_p h2o_c + g3ps_c --> glyc3p_c + h_c + ser_dsh_L_c h2o_p + g3ps_p --> glyc3p_p + h_p + ser_dsh_L_p h2o_c + g3pg_c --> glyc_c + glyc3p_c + h_c h2o_p + g3pg_p --> glyc_p + glyc3p_p + h_p h2o_c + g3pi_c --> glyc3p_c + h_c + inost_c h2o_p + g3pi_p --> glyc3p_p + inost_p + h_p grdp_c + ipdp_c --> frdp_c + ppi_c grxox_c + 2.0 gthrd_c --> grxrd_c + gthox_c atp_c + gsn_c --> adp_c + h_c + gmp_c h_p + gsn_p --> gsn_c + h_c gsn_e <=> gsn_p gtspmd_c + h2o_c --> gthrd_c + spmd_c spmd_c + atp_c + gthrd_c --> gtspmd_c + adp_c + pi_c + h_c gthox_e <=> gthox_p gthox_c + h_c + nadph_c <=> nadp_c + 2.0 gthrd_c h2o2_c + 2.0 gthrd_c --> 2.0 h2o_c + gthox_c h2o_p + gthrd_p --> cgly_p + glu_dsh_L_p h2o_c + atp_c + gthrd_c --> adp_c + pi_c + h_c + gthrd_p gthrd_p + h2o_c + atp_c --> adp_c + pi_c + h_c + gthrd_c gthrd_e <=> gthrd_p gly_c + atp_c + glucys_c --> adp_c + pi_c + h_c + gthrd_c h2o_c + gtp_c --> for_c + h_c + ahdt_c 3.0 h2o_c + gtp_c --> for_c + 2.0 h_c + 25drapp_c + ppi_c h2o_c + gdptp_c --> pi_c + h_c + ppgpp_c gtp_c + atp_c --> amp_c + gdptp_c + h_c h2o_c + gtp_c + h_c --> nh4_c + xtp_c gtp_e <=> gtp_p gtp_c --> 35cgmp_c + ppi_c h2o_c + gua_c + h_c --> nh4_c + xan_c gua_c + prpp_c --> gmp_c + ppi_c h_p + gua_p --> gua_c + h_c gua_e <=> gua_p gua_p <=> gua_c glcur_c <=> fruur_c galur_c <=> tagur_c h2o_p + glcur1p_p --> pi_p + glcur_p h2o2_e <=> h2o2_p h2o_e <=> h2o_p h2o_p <=> h2o_c h2s_c + 2.0 o2_c --> 2.0 h_c + so4_c h2s_c --> h2s_p h2s_e <=> h2s_p h2_e <=> h2_p h2_p <=> h2_c nadh_c + aacoa_c + h_c <=> nad_c + 3hbcoa_c nadh_c + 3ohcoa_c + h_c <=> nad_c + 3hhcoa_c nadh_c + 3oocoa_c + h_c <=> nad_c + 3hocoa_c nadh_c + 3odcoa_c + h_c <=> nad_c + 3hdcoa_c 3oddcoa_c + nadh_c + h_c <=> nad_c + 3hddcoa_c nadh_c + h_c + 3otdcoa_c <=> nad_c + 3htdcoa_c nadh_c + h_c + 3ohdcoa_c <=> 3hhdcoa_c + nad_c nadh_c + 3oodcoa_c + h_c <=> 3hodcoa_c + nad_c nad_c + 3hadpcoa_c <=> nadh_c + h_c + oxadpcoa_c octdp_c + 4hbz_c --> 3ophb_c + ppi_c h_p + 3hcinnm_p <=> 3hcinnm_c + h_c 3hcinnm_e <=> 3hcinnm_p h2o_c + co2_c <=> hco3_c + h_c amet_c + hcys_dsh_L_c --> ahcys_c + met_dsh_L_c + h_c hcys_dsh_L_c + mmet_c --> 2.0 met_dsh_L_c + h_c hdca_e --> hdca_p hdcea_e --> hdcea_p frdp_c + h2o_c + pheme_c --> ppi_c + hemeO_c hhlipa_c + atp_c --> phhlipa_c + adp_c + h_c atp_c + hphhlipa_c --> adp_c + h_c + phphhlipa_c lipa_c + adphep_dsh_LD_c --> hlipa_c + adp_c + h_c hlipa_c + adphep_dsh_LD_c --> adp_c + hhlipa_c + h_c phhlipa_c + adphep_dsh_LD_c --> adp_c + hphhlipa_c + h_c gggagicolipa_c + adphep_dsh_LD_c --> adp_c + colipa_c + h_c 4mhetz_c + atp_c --> adp_c + h_c + 4mpetz_c glc_dsh_D_c + atp_c --> g6p_c + adp_c + h_c man_c + atp_c --> adp_c + man6p_c + h_c atp_c + fru_c --> adp_c + h_c + f6p_c h_p + hxa_p <=> h_c + hxa_c h2o_c + hg2_c + atp_c --> adp_c + pi_c + h_c + hg2_p h_p + hg2_c --> hg2_p + h_c hg2_e <=> hg2_p h2o_c + histd_c + 2.0 nad_c --> 2.0 nadh_c + 3.0 h_c + his_dsh_L_c h2o_c + hisp_c --> histd_c + pi_c his_dsh_L_c + atp_c + trnahis_c --> histrna_c + amp_c + ppi_c h2o_c + his_dsh_L_p + atp_c --> pi_c + h_c + his_dsh_L_c + adp_c h_p + his_dsh_L_p <=> his_dsh_L_c + h_c his_dsh_L_e <=> his_dsh_L_p h2o_c + hkndd_c --> succ_c + op4en_c + h_c h2o_c + hkntd_c --> fum_c + h_c + op4en_c h2o_c + 4.0 ppbng_c --> hmbil_c + 4.0 nh4_c 4ahmmp_c + atp_c --> adp_c + h_c + 4ampm_c hom_dsh_L_c + h_p --> hom_dsh_L_p + h_c hom_dsh_L_e <=> hom_dsh_L_p 4h2opntn_c --> pyr_c + acald_c 6hmhpt_c + atp_c --> 6hmhptpp_c + amp_c + h_c o2_c + dhpppn_c --> hkndd_c + h_c h_p + 3hpppn_p <=> 3hpppn_c + h_c 3hpppn_e <=> 3hpppn_p hpyr_c <=> 2h3oppan_c nadh_c + hpyr_c + h_c --> nad_c + glyc_dsh_R_c hpyr_c + nadph_c + h_c --> nadp_c + glyc_dsh_R_c nadp_c + hom_dsh_L_c <=> aspsa_c + h_c + nadph_c hom_dsh_L_c + atp_c --> adp_c + h_c + phom_c hom_dsh_L_c + succoa_c --> coa_c + suchms_c glu_dsh_L_c + imacp_c --> hisp_c + akg_c h2o_c + nad_c + hxan_c --> nadh_c + h_c + xan_c hxa_e <=> hxa_p accoa_c + hxa_c --> hxcoa_c + ac_c hxan_c + prpp_c --> imp_c + ppi_c h2_c + q8_c + 2.0 h_c --> q8h2_c + 2.0 h_p h2_c + mqn8_c + 2.0 h_c --> 2.0 h_p + mql8_c h2_c + 2dmmq8_c + 2.0 h_c --> 2.0 h_p + 2dmmql8_c h2o_c + pyam5p_c --> pi_c + pydam_c hxan_e <=> hxan_p hxan_p <=> hxan_c h_e <=> h_p iscssh_c + 2fe1s_c + iscu_c --> iscu_dsh_2fe2s_c + 4.0 h_c + iscs_c 2.0 fe2_c + 2.0 iscssh_c + fadh2_c + iscu_c --> 2.0 iscs_c + 6.0 h_c + iscu_dsh_2fe2s_c + fad_c 2.0 fe2_c + 2.0 iscssh_c + fadh2_c + iscu_dsh_2fe2s_c --> 2.0 iscs_c + 6.0 h_c + iscu_dsh_2fe2s2_c + fad_c iscu_dsh_2fe2s_c + 4.0 h_c --> 2fe2s_c + iscu_c iscu_dsh_2fe2s2_c + fadh2_c + 2.0 h_c --> fad_c + iscu_dsh_4fe4s_c iscu_dsh_4fe4s_c + 4.0 h_c --> 4fe4s_c + iscu_c nadp_c + icit_c <=> co2_c + akg_c + nadph_c chor_c <=> ichor_c chor_c --> ichor_c h2o_c + ichor_c --> pyr_c + 23ddhb_c icit_c --> succ_c + glx_c cys_dsh_L_c + iscs_c --> iscssh_c + ala_dsh_L_c nadh_c + 5dglcn_c + h_c <=> idon_dsh_L_c + nad_c 5dglcn_c + h_c + nadph_c --> nadp_c + idon_dsh_L_c h_p + idon_dsh_L_p <=> idon_dsh_L_c + h_c idon_dsh_L_e <=> idon_dsh_L_p prlp_c + gln_dsh_L_c --> eig3p_c + glu_dsh_L_c + aicar_c + h_c eig3p_c --> h2o_c + imacp_c 2cpr5p_c + h_c --> h2o_c + co2_c + 3ig3p_c ile_dsh_L_c + akg_c <=> glu_dsh_L_c + 3mop_c ile_dsh_L_c + trnaile_c + atp_c --> amp_c + ppi_c + iletrna_c ile_dsh_L_p + h2o_c + atp_c --> adp_c + pi_c + h_c + ile_dsh_L_c ile_dsh_L_p + h_p <=> h_c + ile_dsh_L_c ile_dsh_L_e <=> ile_dsh_L_p h2o_c + imp_c <=> fprica_c h2o_c + nad_c + imp_c --> nadh_c + h_c + xmp_c imp_e <=> imp_p h_c + indole_c --> h_p + indole_p h_p + indole_p <=> h_c + indole_c indole_e <=> indole_p inost_p + na1_p --> na1_c + inost_c h2o_c + ins_c --> hxan_c + rib_dsh_D_c atp_c + ins_c --> adp_c + h_c + imp_c inost_e <=> inost_p h_p + ins_p --> ins_c + h_c h_p + ins_p <=> ins_c + h_c ins_e <=> ins_p ipdp_c <=> dmpp_c nadh_c + h_c + h2mb4p_c --> nad_c + h2o_c + ipdp_c nad_c + 3c2hmp_c --> nadh_c + 3c4mop_c + h_c 3c2hmp_c <=> h2o_c + 2ippm_c h2o_c + 2ippm_c <=> 3c3hmp_c 3mob_c + h2o_c + accoa_c --> h_c + coa_c + 3c3hmp_c isetac_p + h2o_c + atp_c --> adp_c + pi_c + h_c + isetac_c isetac_e <=> isetac_p h2o_c + atp_c + kdo2lipid4_c --> adp_c + pi_c + h_c + kdo2lipid4_p h2o_c + kdo2lipid4_p + atp_c --> adp_c + pi_c + h_c + kdo2lipid4_e nadp_c + 23dhmb_c <=> alac_dsh_S_c + h_c + nadph_c h_c + nadph_c + 2ahbut_c <=> nadp_c + 23dhmp_c h_c + malACP_c + acACP_c --> co2_c + ACP_c + actACP_c h_c + malACP_c + accoa_c --> co2_c + actACP_c + coa_c kdo_c + ctp_c --> ckdo_c + ppi_c h2o_c + kdo8p_c --> pi_c + kdo_c h2o_c + ara5p_c + pep_c --> kdo8p_c + pi_c 3dhgulnp_c + h_c --> co2_c + xu5p_dsh_L_c h2o_c + k_p + atp_c --> k_c + adp_c + pi_c + h_c k_p + h_p --> k_c + h_c k_c + h_p --> k_p + h_c k_e <=> k_p lac_dsh_L_c + q8_c --> q8h2_c + pyr_c lac_dsh_L_c + mqn8_c --> pyr_c + mql8_c lac_dsh_L_p + h_p <=> lac_dsh_L_c + h_c lac_dsh_L_e <=> lac_dsh_L_p colipa_p + uLa4n_p --> udcpp_p + acolipa_p h2o_c + lcts_c --> gal_c + glc_dsh_D_c lcts_p + h2o_p --> gal_p + glc_dsh_D_p h2o_c + LalaDgluMdap_c --> LalaDglu_c + 26dap_dsh_M_c LalaDglu_e <=> LalaDglu_p h_p + LalaDglu_p --> LalaDglu_c + h_c LalaLglu_e <=> LalaLglu_p h_p + LalaLglu_p --> h_c + LalaLglu_c nadh_c + h_c + mthgxl_c --> nad_c + lald_dsh_D_c mthgxl_c + h_c + nadph_c --> nadp_c + lald_dsh_L_c h2o_c + LalaLglu_c --> ala_dsh_L_c + glu_dsh_L_c nad_c + h2o_c + lald_dsh_L_c --> nadh_c + 2.0 h_c + lac_dsh_L_c nadh_c + h_c + lald_dsh_D_c <=> 12ppd_dsh_R_c + nad_c nadh_c + h_c + lald_dsh_L_c <=> nad_c + 12ppd_dsh_S_c lcts_c + h_p --> lcts_p + h_c lcts_e <=> lcts_p lcts_p + h_p <=> lcts_c + h_c nad_c + lac_dsh_D_c <=> nadh_c + pyr_c + h_c lac_dsh_D_c + q8_c --> q8h2_c + pyr_c glu_dsh_L_c + 4mop_c --> akg_c + leu_dsh_L_c trnaleu_c + atp_c + leu_dsh_L_c --> leutrna_c + amp_c + ppi_c leu_dsh_L_p + h2o_c + atp_c --> pi_c + h_c + adp_c + leu_dsh_L_c h_p + leu_dsh_L_p <=> h_c + leu_dsh_L_c leu_dsh_L_e <=> leu_dsh_L_p mthgxl_c + gthrd_c --> lgt_dsh_S_c lipa_cold_c + h2o_c + atp_c --> adp_c + pi_c + h_c + lipa_cold_p h_e + hdca_e + colipa_e --> h2o_e + hacolipa_e h_e + hdca_e + lipa_e --> h2o_e + halipa_e lipoamp_c --> lipopb_c + amp_c atp_c + lipoate_c --> lipoamp_c + ppi_c lipa_c + h2o_c + atp_c --> adp_c + pi_c + h_c + lipa_p h2o_c + lipa_p + atp_c --> adp_c + pi_c + h_c + lipa_e ocACP_c + h_c --> ACP_c + octapb_c nad_c + h_c + 2.0 amet_c + 4fe4s_c + octapb_c --> lipopb_c + nadh_c + 2.0 dad_dsh_5_c + 2.0 met_dsh_L_c + 2.0 fe2_c + 2fe2s_c lipoate_p + h_p --> lipoate_c + h_c lipoate_e <=> lipoate_p lipidX_c + u23ga_c --> udp_c + h_c + lipidAds_c h2o_p + 1ddecg3p_p --> glyc3p_p + ddca_p + h_p 1tdecg3p_p + h2o_p --> glyc3p_p + h_p + ttdca_p h2o_p + 1tdec7eg3p_p --> glyc3p_p + h_p + ttdcea_p h2o_p + 1hdecg3p_p --> glyc3p_p + h_p + hdca_p h2o_p + 1hdec9eg3p_p --> glyc3p_p + h_p + hdcea_p 1odecg3p_p + h2o_p --> glyc3p_p + h_p + ocdca_p h2o_p + 1odec11eg3p_p --> glyc3p_p + h_p + ocdcea_p 1agpe120_p + h2o_p --> ddca_p + h_p + g3pe_p 1agpe140_p + h2o_p --> ttdca_p + h_p + g3pe_p 1agpe141_p + h2o_p --> h_p + ttdcea_p + g3pe_p 1agpe160_p + h2o_p --> hdca_p + h_p + g3pe_p h2o_p + 1agpe161_p --> h_p + hdcea_p + g3pe_p 1agpe180_p + h2o_p --> ocdca_p + h_p + g3pe_p h2o_p + 1agpe181_p --> g3pe_p + h_p + ocdcea_p h2o_p + 1agpg120_p --> ddca_p + h_p + g3pg_p h2o_p + 1agpg140_p --> ttdca_p + h_p + g3pg_p 1agpg141_p + h2o_p --> h_p + ttdcea_p + g3pg_p h2o_p + 1agpg160_p --> hdca_p + h_p + g3pg_p h2o_p + 1agpg161_p --> h_p + hdcea_p + g3pg_p 1agpg180_p + h2o_p --> ocdca_p + h_p + g3pg_p 1agpg181_p + h2o_p --> g3pg_p + h_p + ocdcea_p h2o_c + 2ddecg3p_c --> glyc3p_c + 2.0 h_c + ddca_c h2o_c + 2tdecg3p_c --> glyc3p_c + 2.0 h_c + ttdca_c h2o_c + 2tdec7eg3p_c --> glyc3p_c + 2.0 h_c + ttdcea_c h2o_c + 2hdecg3p_c --> glyc3p_c + hdca_c + 2.0 h_c 2hdec9eg3p_c + h2o_c --> glyc3p_c + 2.0 h_c + hdcea_c h2o_c + 2odecg3p_c --> ocdca_c + glyc3p_c + 2.0 h_c h2o_c + 2odec11eg3p_c --> ocdcea_c + glyc3p_c + 2.0 h_c 2agpe120_c + pg120_c --> apg120_c + g3pe_c pg140_c + 2agpe140_c --> g3pe_c + apg140_c pg141_c + 2agpe141_c --> apg141_c + g3pe_c pg160_c + 2agpe160_c --> apg160_c + g3pe_c 2agpe161_c + pg161_c --> apg161_c + g3pe_c 2agpe180_c + pg180_c --> apg180_c + g3pe_c 2agpe181_c + pg181_c --> apg181_c + g3pe_c 2agpg120_c + pg120_c --> apg120_c + g3pg_c 2agpg140_c + pg140_c --> apg140_c + g3pg_c pg141_c + 2agpg141_c --> apg141_c + g3pg_c 2agpg160_c + pg160_c --> apg160_c + g3pg_c 2agpg161_c + pg161_c --> apg161_c + g3pg_c 2agpg180_c + pg180_c --> apg180_c + g3pg_c 2agpg181_c + pg181_c --> apg181_c + g3pg_c 2agpe120_c + h2o_c --> g3pe_c + ddca_c + h_c h2o_c + 2agpe140_c --> g3pe_c + h_c + ttdca_c h2o_c + 2agpe141_c --> ttdcea_c + h_c + g3pe_c h2o_c + 2agpe160_c --> hdca_c + g3pe_c + h_c h2o_c + 2agpe161_c --> hdcea_c + h_c + g3pe_c h2o_c + 2agpe180_c --> ocdca_c + g3pe_c + h_c h2o_c + 2agpe181_c --> ocdcea_c + g3pe_c + h_c h2o_c + 2agpg120_c --> g3pg_c + h_c + ddca_c h2o_c + 2agpg140_c --> g3pg_c + h_c + ttdca_c h2o_c + 2agpg141_c --> g3pg_c + ttdcea_c + h_c 2agpg160_c + h2o_c --> hdca_c + h_c + g3pg_c h2o_c + 2agpg161_c --> hdcea_c + h_c + g3pg_c h2o_c + 2agpg180_c --> ocdca_c + h_c + g3pg_c h2o_c + 2agpg181_c --> ocdcea_c + h_c + g3pg_c nadp_c + ser_dsh_L_c <=> h_c + nadph_c + 2amsa_c lys_dsh_L_c + h_c --> 15dap_c + co2_c lys_dsh_L_c + trnalys_c + atp_c --> amp_c + ppi_c + lystrna_c lys_dsh_L_p + h2o_c + atp_c --> adp_c + lys_dsh_L_c + pi_c + h_c h_p + lys_dsh_L_p --> lys_dsh_L_c + h_c h_p + lys_dsh_L_c --> h_c + lys_dsh_L_p lys_dsh_L_e <=> lys_dsh_L_p lyx_dsh_L_c --> xylu_dsh_L_c lyx_dsh_L_p + h_p --> h_c + lyx_dsh_L_c lyx_dsh_L_e <=> lyx_dsh_L_p nad_c + mnl1p_c <=> nadh_c + h_c + f6p_c malACP_c + h_c --> co2_c + acACP_c amet_c + malcoa_c --> ahcys_c + malcoame_c mal_dsh_D_c + nad_c --> nadh_c + co2_c + pyr_c 2.0 h_p + mal_dsh_D_p --> mal_dsh_D_c + 2.0 h_c mal_dsh_D_e <=> mal_dsh_D_p h2o_c + glx_c + accoa_c --> coa_c + h_c + mal_dsh_L_c malt_c + accoa_c <=> acmalt_c + coa_c malthx_p + h2o_c + atp_c --> adp_c + pi_c + h_c + malthx_c malthx_e --> malthx_p atp_c + h2o_c + maltpt_p --> adp_c + pi_c + h_c + maltpt_c maltpt_e --> maltpt_p malttr_p + h2o_c + atp_c --> adp_c + pi_c + h_c + malttr_c malttr_e --> malttr_p h2o_c + atp_c + maltttr_p --> adp_c + pi_c + h_c + maltttr_c maltttr_e --> maltttr_p h2o_c + malt_p + atp_c --> malt_c + adp_c + pi_c + h_c malt_p + pep_c --> pyr_c + malt6p_c malt_e --> malt_p 2.0 h_p + mal_dsh_L_p --> 2.0 h_c + mal_dsh_L_c 3.0 h_p + mal_dsh_L_p --> 3.0 h_c + mal_dsh_L_c h_p + mal_dsh_L_c --> mal_dsh_L_p + h_c mal_dsh_L_e <=> mal_dsh_L_p gdp_c + man1p_c + h_c --> pi_c + gdpmann_c man6p_c <=> f6p_c man6p_p + 2.0 pi_c --> 2.0 pi_p + man6p_c man6p_e <=> man6p_p mana_c + nad_c <=> nadh_c + fruur_c + h_c manglyc_p + pep_c --> pyr_c + man6pglyc_c manglyc_e <=> manglyc_p h2o_c + man6pglyc_c --> man6p_c + glyc_dsh_R_c man_p + pep_c --> pyr_c + man6p_c man_e <=> man_p 2mcit_c --> h2o_c + 2mcacn_c micit_c <=> pyr_c + succ_c ppcoa_c + h2o_c + oaa_c --> 2mcit_c + h_c + coa_c ACP_c + malcoa_c <=> malACP_c + coa_c mercppyr_c + cyan_c --> pyr_c + tcynt_c + h_c murein5p5p_p --> murein5px4p_p + ala_dsh_D_p murein5p5p_p --> alaala_p + murein5px3p_p murein5p5p5p_p --> 2.0 ala_dsh_D_p + murein5px4px4p_p h2o_p + murein5px4p_p --> ala_dsh_D_p + murein4px4p_p h2o_p + murein5px4px4p_p --> ala_dsh_D_p + murein4px4px4p_p murein5p5p_p + h2o_p --> ala_dsh_D_p + murein5p4p_p murein5p4p_p + h2o_p --> murein4p4p_p + ala_dsh_D_p murein5p3p_p + h2o_p --> murein4p3p_p + ala_dsh_D_p h2o_p + murein4px4p_p --> murein4p4p_p h2o_p + murein3px4p_p --> murein4p3p_p h2o_p + murein5px4p_p --> murein5p4p_p h2o_p + murein4px4px4p_p --> murein4px4p4p_p nad_c + mal_dsh_L_c <=> nadh_c + h_c + oaa_c q8_c + mal_dsh_L_c --> q8h2_c + oaa_c mqn8_c + mal_dsh_L_c --> oaa_c + mql8_c nad_c + mal_dsh_L_c --> nadh_c + pyr_c + co2_c nadp_c + mal_dsh_L_c --> pyr_c + co2_c + nadph_c 2mecdp_c + h_c + 2.0 flxr_c --> h2mb4p_c + h2o_c + 2.0 flxso_c 2p4c2me_c --> cmp_c + 2mecdp_c h_p + melib_p --> melib_c + h_c h_p + melib_c --> h_c + melib_p melib_e <=> melib_p meoh_e <=> meoh_p meoh_p <=> meoh_c 2me4p_c + h_c + ctp_c --> 4c2me_c + ppi_c h2o_c + met_dsh_L_c + atp_c --> pi_c + ppi_c + amet_c met_dsh_D_p + h2o_c + atp_c --> adp_c + met_dsh_D_c + h_c + pi_c met_dsh_D_e <=> met_dsh_D_p met_dsh_L_c + h2o2_c --> h2o_c + metsox_dsh_S_dsh_L_c met_dsh_L_c + h2o2_c --> h2o_c + metsox_dsh_R_dsh_L_c 5mthf_c + hcys_dsh_L_c --> met_dsh_L_c + h_c + thf_c metsox_dsh_S_dsh_L_p + h2o_c + atp_c --> adp_c + pi_c + h_c + metsox_dsh_S_dsh_L_c metsox_dsh_S_dsh_L_e <=> metsox_dsh_S_dsh_L_p h2o_c + metsox_dsh_R_dsh_L_p + atp_c --> adp_c + pi_c + metsox_dsh_R_dsh_L_c + h_c metsox_dsh_R_dsh_L_e <=> metsox_dsh_R_dsh_L_p trdrd_c + metsox_dsh_S_dsh_L_c --> h2o_c + met_dsh_L_c + trdox_c metsox_dsh_R_dsh_L_c + trdrd_c --> met_dsh_L_c + h2o_c + trdox_c met_dsh_L_c + atp_c + trnamet_c --> mettrna_c + amp_c + ppi_c h2o_c + met_dsh_L_p + atp_c --> adp_c + pi_c + h_c + met_dsh_L_c met_dsh_L_e <=> met_dsh_L_p mg2_p + 2.0 h_c <=> 2.0 h_p + mg2_c mg2_e <=> mg2_p mg2_p --> mg2_c h2o_c + atp_c + mg2_p --> adp_c + pi_c + h_c + mg2_c dhap_c --> pi_c + mthgxl_c h2o_c + mi1p_dsh_D_c --> pi_c + inost_c h2o_c + 2mcacn_c <=> micit_c mincyc_e <=> mincyc_p mincyc_p + h_p --> h_c + mincyc_e minohp_e --> minohp_p h2o_p + murein5px4p_p --> alaala_p + murein3px4p_p murein4p4p_p + h2o_p --> murein4p3p_p + ala_dsh_D_p murein5p5p_p + h2o_p --> alaala_p + murein5p3p_p h2o_p + murein4p3p_p --> ala_dsh_D_p + murein3p3p_p h2o_p + murein5px3p_p --> murein3px3p_p + alaala_p murein3px3p_p + h2o_p --> murein3p3p_p h2o_p + murein5px3p_p --> murein5p3p_p h2o_c + malttr_c --> glc_dsh_D_c + malt_c h2o_c + maltttr_c --> glc_dsh_D_c + malttr_c h2o_c + maltpt_c --> glc_dsh_D_c + maltttr_c h2o_c + malthx_c --> glc_dsh_D_c + maltpt_c h2o_c + malthp_c --> glc_dsh_D_c + malthx_c murein4p4p_p --> 2.0 anhgm4p_p murein4p3p_p --> anhgm4p_p + anhgm3p_p murein3p3p_p --> 2.0 anhgm3p_p murein4px4p4p_p --> anhgm4p_p + murein4px4p_p maltpt_c + pi_c <=> maltttr_c + g1p_c malthx_c + pi_c <=> maltpt_c + g1p_c malthp_c + pi_c <=> malthx_c + g1p_c mmcoa_dsh_S_c + h_c --> co2_c + ppcoa_c mmet_p + h_p --> h_c + mmet_c mmet_e <=> mmet_p succoa_c --> mmcoa_dsh_S_c mn2_c + h_p --> mn2_p + h_c mn2_p --> mn2_c h2o_c + man6p_c --> pi_c + man_c mnl_p + pep_c --> pyr_c + mnl1p_c mnl_e <=> mnl_p mana_c --> 2ddglcn_c + h2o_c h_p + mn2_p --> h_c + mn2_c mn2_e <=> mn2_p nadh_c + iscssh_c + moadamp_c --> nad_c + iscs_c + moadcosh_c + amp_c ckdo_c + lipidA_c --> cmp_c + h_c + kdolipid4_c ckdo_c + kdolipid4_c --> cmp_c + kdo2lipid4_c + h_c phphhlipa_c + ckdo_c --> cmp_c + kphphhlipa_c + h_c h2o_c + atp_c + mobd_p --> adp_c + pi_c + h_c + mobd_c mobd_e <=> mobd_p moco_c + h_c + ctp_c --> mococdp_c + ppi_c 2.0 h_c + mptamp_c + mobd_c --> amp_c + h2o_c + cu2_c + moco_c gtp_c + h_c + moco_c --> mocogdp_c + ppi_c h2o_c + mlthf_c + 3mob_c --> 2dhp_c + thf_c o2_c + mal_dsh_L_c <=> h2o2_c + oaa_c mpt_c + atp_c + h_c --> mptamp_c + ppi_c 2.0 uaagmda_c --> 2.0 udcpdp_c + murein5p5p_p + 2.0 h_c murein5p5p_p + uaagmda_c --> udcpdp_c + murein5p5p5p_p + h_c 2.0 moadcosh_c + cu2_c + cpmp_c --> 5.0 h_c + 2.0 moadcoo_c + mpt_c moadcoo_c + atp_c + h_c --> moadamp_c + ppi_c msa_c + nadph_c + h_c --> nadp_c + 3hpp_c mso3_p + atp_c + h2o_c --> adp_c + pi_c + h_c + mso3_c mso3_e <=> mso3_p 5mta_c + h2o_c --> 5mtr_c + ade_c h2o_c + methf_c <=> 10fthf_c + h_c mlthf_c + nadp_c <=> methf_c + nadph_c mlthf_c + nadh_c + 2.0 h_c --> nad_c + 5mthf_c h2o_c + mdhdhf_c --> mththf_c h2o_c + o2_c + Nmtrp_c --> h2o2_c + fald_c + trp_dsh_L_c n2o_e <=> n2o_p n2o_p <=> n2o_c h2o_c + acg5sa_c --> ac_c + glu5sa_c nac_e <=> nac_p nac_p --> nac_c h2o_c + nad_c --> nmn_c + amp_c + 2.0 h_c nadh_c + mqn8_c + h_c --> nad_c + mql8_c nadh_c + 4.0 h_c + q8_c --> q8h2_c + 3.0 h_p + nad_c nadh_c + mqn8_c + 4.0 h_c --> 3.0 h_p + nad_c + mql8_c nadh_c + 4.0 h_c + 2dmmq8_c --> 3.0 h_p + nad_c + 2dmmql8_c nadh_c + q8_c + h_c --> q8h2_c + nad_c nadh_c + 2dmmq8_c + h_c --> nad_c + 2dmmql8_c nad_c + atp_c --> nadp_c + adp_c + h_c h2o_c + nad_c --> adprib_c + ncam_c + h_c q8_c + h_c + nadph_c --> nadp_c + q8h2_c mqn8_c + h_c + nadph_c --> nadp_c + mql8_c 2dmmq8_c + h_c + nadph_c --> nadp_c + 2dmmql8_c h2o_c + nadp_c --> nad_c + pi_c nh4_c + atp_c + dnad_c --> nad_c + amp_c + h_c + ppi_c nad_c + nadph_c --> nadh_c + nadp_c h2o_c + nac_c + atp_c + prpp_c --> adp_c + ppi_c + nicrnt_c + pi_c 2.0 na1_c + 3.0 h_p --> 3.0 h_c + 2.0 na1_p na1_c + 2.0 h_p --> 2.0 h_c + na1_p na1_c + h_p --> h_c + na1_p na1_e <=> na1_p gdp_c + atp_c <=> gtp_c + adp_c udp_c + atp_c <=> adp_c + utp_c atp_c + cdp_c <=> adp_c + ctp_c atp_c + dtdp_c <=> dttp_c + adp_c atp_c + dgdp_c <=> adp_c + dgtp_c atp_c + dudp_c <=> adp_c + dutp_c atp_c + dcdp_c <=> adp_c + dctp_c dadp_c + atp_c <=> datp_c + adp_c nh4_e <=> nh4_p nh4_p <=> nh4_c nadh_c + 2.0 no_c + h_c --> nad_c + n2o_c + h2o_c ni2_c + h2o_c + atp_c --> adp_c + pi_c + h_c + ni2_p ni2_c + h_p --> ni2_p + h_c ni2_e <=> ni2_p ni2_p --> ni2_c ni2_p + h2o_c + atp_c --> ni2_c + adp_c + pi_c + h_c nmn_c + h_c + atp_c --> ppi_c + nad_c h2o_c + nmn_c --> nh4_c + nicrnt_c h2o_c + nmn_c --> r5p_c + ncam_c + h_c nmn_p --> nmn_c h2o_c + nmn_p --> r5p_c + ncam_c + h_c nmn_e <=> nmn_p h2o_c + ncam_c --> nh4_c + nac_c nicrnt_c + atp_c + h_c <=> dnad_c + ppi_c nicrnt_c + dmbzid_c --> nac_c + h_c + 5prdmbz_c 2.0 h_c + prpp_c + quln_c --> co2_c + ppi_c + nicrnt_c no2_p + h_p <=> h_c + no2_c no2_e <=> no2_p q8h2_c + no3_p --> no2_p + h2o_p + q8_c q8h2_c + 2.0 h_c + no3_c --> 2.0 h_p + h2o_c + q8_c + no2_c no3_p + mql8_c --> no2_p + h2o_p + mqn8_c 2.0 h_c + no3_c + mql8_c --> 2.0 h_p + mqn8_c + h2o_c + no2_c no3_p + no2_c --> no2_p + no3_c no3_e <=> no3_p nadh_c + 2.0 no_c + 2.0 o2_c --> h_c + 2.0 no3_c + nad_c 2.0 no_c + 2.0 o2_c + nadph_c --> h_c + 2.0 no3_c + nadp_c novbcn_e <=> novbcn_p h_p + novbcn_p --> h_c + novbcn_e no_e <=> no_p no_p <=> no_c h2o_c + dump_c --> duri_c + pi_c h2o_c + xmp_c --> pi_c + xtsn_c h2o_p + xmp_p --> pi_p + xtsn_p h2o_c + imp_c --> ins_c + pi_c h2o_p + imp_p --> pi_p + ins_p h2o_c + dimp_c --> din_c + pi_c dimp_p + h2o_p --> pi_p + din_p dump_p + h2o_p --> pi_p + duri_p h2o_c + ump_c --> uri_c + pi_c h2o_p + ump_p --> pi_p + uri_p h2o_c + dcmp_c --> pi_c + dcyt_c h2o_p + dcmp_p --> pi_p + dcyt_p h2o_c + cmp_c --> cytd_c + pi_c h2o_p + cmp_p --> pi_p + cytd_p h2o_c + dtmp_c --> thymd_c + pi_c h2o_p + dtmp_p --> pi_p + thymd_p h2o_c + damp_c --> pi_c + dad_dsh_2_c h2o_p + damp_p --> pi_p + dad_dsh_2_p h2o_c + amp_c --> adn_c + pi_c h2o_p + amp_p --> adn_p + pi_p h2o_c + dgmp_c --> dgsn_c + pi_c h2o_p + dgmp_p --> pi_p + dgsn_p h2o_c + gmp_c --> pi_c + gsn_c h2o_p + gmp_p --> pi_p + gsn_p h2o_c + atp_c --> adp_c + pi_c + h_c h2o_c + itp_c --> idp_c + h_c + pi_c ditp_c + h2o_c --> pi_c + didp_c + h_c h2o_c + xtp_c --> pi_c + h_c + xdp_c h2o_c + gtp_c --> gdp_c + pi_c + h_c gtp_p + h2o_p --> pi_p + gdp_p + h_p h2o_c + ctp_c --> cdp_c + pi_c + h_c h2o_c + dgtp_c --> dgmp_c + h_c + ppi_c ditp_c + h2o_c --> dimp_c + h_c + ppi_c h2o_c + xtp_c --> xmp_c + h_c + ppi_c h2o_c + gtp_c --> gmp_c + h_c + ppi_c h2o_c + dctp_c --> dcmp_c + h_c + ppi_c h2o_c + ctp_c --> cmp_c + h_c + ppi_c h2o_c + datp_c --> damp_c + h_c + ppi_c h2o_c + atp_c --> amp_c + h_c + ppi_c dttp_c + h2o_c --> dtmp_c + h_c + ppi_c h2o_c + utp_c --> h_c + ump_c + ppi_c h2o_c + itp_c --> imp_c + h_c + ppi_c h2o_c + dgtp_c --> dgsn_c + pppi_c h2o_c + gtp_c --> pppi_c + gsn_c 3.0 nadh_c + 5.0 h_c + no2_c --> 3.0 nad_c + 2.0 h2o_c + nh4_c 3.0 q8h2_c + 2.0 h_p + no2_p --> nh4_p + 2.0 h2o_p + 3.0 q8_c 2.0 h_p + no2_p + 3.0 mql8_c --> 3.0 mqn8_c + nh4_p + 2.0 h2o_p h2o_c + atp_c + o16a4colipa_p --> adp_c + pi_c + h_c + o16a4colipa_e colipa_p + o16a4und_p --> udcpdp_p + h_p + o16a4colipa_p 2.0 o16aund_p --> udcpdp_p + h_p + o16a2und_p o16aund_p + o16a2und_p --> o16a3und_p + udcpdp_p + h_p o16a3und_p + o16aund_p --> udcpdp_p + h_p + o16a4und_p ragund_c + accoa_c --> aragund_c + coa_c o16aund_c --> o16aund_p garagund_c + udpgalfur_c --> udp_c + h_c + gfgaragund_c aragund_c + udpg_c --> garagund_c + udp_c + h_c udpg_c + gfgaragund_c --> udp_c + h_c + o16aund_c o2s_e <=> o2s_p o2_e <=> o2_p o2_p <=> o2_c oaa_c + h_c --> pyr_c + co2_c 2obut_c + coa_c --> for_c + ppcoa_c cbp_c + orn_c <=> citr_dsh_L_c + pi_c + h_c ocdca_e --> ocdca_p ocdcea_e --> ocdcea_p octa_e <=> octa_p frdp_c + 5.0 ipdp_c --> octdp_c + 5.0 ppi_c octa_c + h_c + atp_c --> amp_c + ppi_c + octapb_c hgmeACP_c --> h2o_c + egmeACP_c nadph_c + h_c + ogmeACP_c --> nadp_c + hgmeACP_c h_c + malACP_c + malcoame_c --> co2_c + coa_c + ogmeACP_c glu_dsh_L_c + ohpb_c <=> akg_c + phthr_c 2ohph_c + amet_c --> ahcys_c + h_c + 2omph_c 2ombzl_c + amet_c --> ahcys_c + 2ommbl_c + h_c 3c4mop_c + h_c --> co2_c + 4mop_c 2ommbl_c + 0.5 o2_c --> 2omhmbl_c 2ommbl_c + nad_c + 3.0 h2o_c + 2.0 atp_c --> nadh_c + 2.0 adp_c + 2.0 pi_c + 3.0 h_c + 2omhmbl_c orot5p_c + h_c --> co2_c + ump_c 0.5 o2_c + 2omph_c --> 2ombzl_c nad_c + 3.0 h2o_c + 2.0 atp_c + 2omph_c --> nadh_c + 2.0 adp_c + 2.0 pi_c + 3.0 h_c + 2ombzl_c h2o_c + op4en_c --> 4h2opntn_c 3ophb_c + h_c --> 2oph_c + co2_c 2oph_c + 0.5 o2_c --> 2ohph_c nad_c + 3.0 h2o_c + 2oph_c + 2.0 atp_c --> nadh_c + 2ohph_c + 2.0 adp_c + 2.0 pi_c + 3.0 h_c hpmeACP_c --> h2o_c + epmeACP_c nadph_c + h_c + opmeACP_c --> nadp_c + hpmeACP_c h_c + gmeACP_c + malACP_c --> co2_c + ACP_c + opmeACP_c h_c + orn_c --> co2_c + ptrc_c h2o_c + orn_p + atp_c --> adp_c + pi_c + h_c + orn_c orn_e <=> orn_p 2.0 h_p + orot_p --> orot_c + 2.0 h_c orot_e <=> orot_p orot5p_c + ppi_c <=> orot_c + prpp_c oxur_c + pi_c --> oxam_c + cbp_c oxalcoa_c + h_c --> co2_c + forcoa_c 2.0 h2o_c + nadp_c + 2oxpaccoa_c --> 3oxdhscoa_c + 2.0 h_c + nadph_c 3oxdhscoa_c + coa_c --> 23dhacoa_c + accoa_c nad_c + 2.0 h2o_c + 1pyr5c_c --> nadh_c + h_c + glu_dsh_L_c 2.0 h_c + nadph_c + 1pyr5c_c --> nadp_c + pro_dsh_L_c pa120_c + h2o_c + atp_c --> adp_c + pi_c + pa120_p + h_c h2o_c + atp_c + pa140_c --> pa140_p + adp_c + pi_c + h_c pa141_c + h2o_c + atp_c --> adp_c + pi_c + h_c + pa141_p pa160_c + h2o_c + atp_c --> adp_c + pi_c + pa160_p + h_c h2o_c + atp_c + pa161_c --> adp_c + pi_c + h_c + pa161_p pa180_c + h2o_c + atp_c --> adp_c + pi_c + h_c + pa180_p h2o_c + pa181_c + atp_c --> adp_c + pi_c + h_c + pa181_p h_p + pacald_p <=> pacald_c + h_c pacald_e <=> pacald_p o2_c + h_c + nadph_c + phaccoa_c --> h2o_c + rephaccoa_c + nadp_c pac_c + atp_c + coa_c --> amp_c + ppi_c + phaccoa_c pant_dsh_R_c + atp_c + ala_dsh_B_c --> amp_c + h_c + ppi_c + pnto_dsh_R_c h2o_c + pa120_c --> pi_c + 12dgr120_c h2o_p + pa120_p --> pi_p + 12dgr120_p h2o_c + pa140_c --> 12dgr140_c + pi_c pa140_p + h2o_p --> pi_p + 12dgr140_p h2o_c + pa141_c --> pi_c + 12dgr141_c h2o_p + pa141_p --> pi_p + 12dgr141_p h2o_c + pa160_c --> pi_c + 12dgr160_c h2o_p + pa160_p --> pi_p + 12dgr160_p h2o_c + pa161_c --> 12dgr161_c + pi_c h2o_p + pa161_p --> 12dgr161_p + pi_p h2o_c + pa180_c --> pi_c + 12dgr180_c h2o_p + pa180_p --> pi_p + 12dgr180_p h2o_c + pa181_c --> pi_c + 12dgr181_c h2o_p + pa181_p --> pi_p + 12dgr181_p ugmda_c + udcpp_c --> uagmda_c + ump_c trdrd_c + paps_c --> pap_c + trdox_c + 2.0 h_c + so3_c grxrd_c + paps_c --> pap_c + grxox_c + 2.0 h_c + so3_c h2o_c + camp_c --> amp_c + h_c h2o_c + 35cgmp_c --> h_c + gmp_c nad_c + pyr_c + coa_c --> nadh_c + co2_c + accoa_c pdx5p_c + nad_c --> nadh_c + h_c + pydx5p_c pdx5p_c + o2_c --> h2o2_c + pydx5p_c nad_c + dxyl5p_c + phthr_c --> nadh_c + pdx5p_c + co2_c + pi_c + 2.0 h2o_c + h_c h2o_c + pdx5p_c --> pydxn_c + pi_c h2o_c + atp_c + pe120_c --> adp_c + pi_c + h_c + pe120_p h2o_c + pe140_c + atp_c --> pe140_p + adp_c + pi_c + h_c pe141_c + h2o_c + atp_c --> pi_c + h_c + adp_c + pe141_p pe160_c + h2o_c + atp_c --> adp_c + pi_c + h_c + pe160_p h2o_c + pe161_c + atp_c --> adp_c + pe161_p + h_c + pi_c pe180_c + atp_c + h2o_c --> adp_c + pi_c + h_c + pe180_p h2o_c + pe181_c + atp_c --> adp_c + pi_c + h_c + pe181_p o2_p + peamn_p + h2o_p --> pacald_p + nh4_p + h2o2_p peamn_e <=> peamn_p nad_c + 4per_c <=> nadh_c + h_c + ohpb_c lipa_p + pe161_p --> 12dgr161_p + enlipa_p lipa_p + pe181_p --> enlipa_p + 12dgr181_p atp_c + f6p_c --> adp_c + h_c + fdp_c atp_c + tag6p_dsh_D_c --> adp_c + h_c + tagdp_dsh_D_c atp_c + s7p_c --> s17bp_c + adp_c + h_c pyr_c + coa_c --> for_c + accoa_c pg120_c + h2o_c + atp_c --> pg120_p + adp_c + pi_c + h_c h2o_c + atp_c + pg140_c --> adp_c + pi_c + h_c + pg140_p h2o_c + pg141_c + atp_c --> adp_c + pi_c + h_c + pg141_p atp_c + h2o_c + pg160_c --> adp_c + pi_c + h_c + pg160_p h2o_c + atp_c + pg161_c --> adp_c + pi_c + h_c + pg161_p pg180_c + h2o_c + atp_c --> adp_c + pi_c + h_c + pg180_p h2o_c + atp_c + pg181_c --> adp_c + pg181_p + pi_c + h_c gam1p_c <=> gam6p_c 3pg_c + nad_c --> nadh_c + h_c + 3php_c g6p_c <=> f6p_c 3pg_c + atp_c <=> 13dpg_c + adp_c h2o_c + 6pgl_c --> h_c + 6pgc_c h2o_c + 2pglyc_c --> glyclt_c + pi_c 2pg_c <=> 3pg_c g1p_c <=> g6p_c h2o_c + pgp120_c + atp_c --> adp_c + pi_c + h_c + pgp120_p atp_c + h2o_c + pgp140_c --> pgp140_p + adp_c + pi_c + h_c h2o_c + pgp141_c + atp_c --> pi_c + h_c + pgp141_p + adp_c pgp160_c + h2o_c + atp_c --> adp_c + pi_c + h_c + pgp160_p h2o_c + pgp161_c + atp_c --> adp_c + pi_c + h_c + pgp161_p pgp180_c + h2o_c + atp_c --> adp_c + pi_c + h_c + pgp180_p pgp181_c + h2o_c + atp_c --> adp_c + pi_c + h_c + pgp181_p h2o_c + pgp120_c --> pi_c + pg120_c h2o_p + pgp120_p --> pg120_p + pi_p h2o_c + pgp140_c --> pi_c + pg140_c pgp140_p + h2o_p --> pi_p + pg140_p h2o_c + pgp141_c --> pg141_c + pi_c pgp141_p + h2o_p --> pi_p + pg141_p h2o_c + pgp160_c --> pg160_c + pi_c h2o_p + pgp160_p --> pi_p + pg160_p h2o_c + pgp161_c --> pi_c + pg161_c h2o_p + pgp161_p --> pg161_p + pi_p h2o_c + pgp180_c --> pi_c + pg180_c h2o_p + pgp180_p --> pi_p + pg180_p h2o_c + pgp181_c --> pi_c + pg181_c h2o_p + pgp181_p --> pi_p + pg181_p cdpdddecg_c + glyc3p_c --> pgp120_c + cmp_c + h_c cdpdtdecg_c + glyc3p_c --> pgp140_c + cmp_c + h_c glyc3p_c + cdpdtdec7eg_c --> pgp141_c + cmp_c + h_c glyc3p_c + cdpdhdecg_c --> pgp160_c + cmp_c + h_c glyc3p_c + cdpdhdec9eg_c --> pgp161_c + cmp_c + h_c cdpdodecg_c + glyc3p_c --> cmp_c + h_c + pgp180_c cdpdodec11eg_c + glyc3p_c --> cmp_c + h_c + pgp181_c pheme_c + h2o_c + atp_c --> adp_c + pi_c + h_c + pheme_p pheme_p --> pheme_e akg_c + phe_dsh_L_c <=> glu_dsh_L_c + phpyr_c trnaphe_c + atp_c + phe_dsh_L_c --> amp_c + phetrna_c + ppi_c phe_dsh_L_p + h_p <=> h_c + phe_dsh_L_c phe_dsh_L_e <=> phe_dsh_L_p 6.0 h2o_p + minohp_p --> inost_p + 6.0 pi_p pi_p + h_p <=> pi_c + h_c pi_e <=> pi_p h2o_c + pi_p + atp_c --> adp_c + 2.0 pi_c + h_c h2o_p + pa120_p --> 2ddecg3p_p + ddca_p pa140_p + h2o_p --> ttdca_p + 2tdecg3p_p h2o_p + pa141_p --> ttdcea_p + 2tdec7eg3p_p h2o_p + pa160_p --> hdca_p + 2hdecg3p_p h2o_p + pa161_p --> 2hdec9eg3p_p + hdcea_p h2o_p + pa180_p --> 2odecg3p_p + ocdca_p h2o_p + pa181_p --> 2odec11eg3p_p + ocdcea_p h2o_p + pe120_p --> 2agpe120_p + h_p + ddca_p pe140_p + h2o_p --> 2agpe140_p + h_p + ttdca_p h2o_p + pe141_p --> 2agpe141_p + h_p + ttdcea_p pe160_p + h2o_p --> 2agpe160_p + hdca_p + h_p h2o_p + pe161_p --> h_p + hdcea_p + 2agpe161_p h2o_p + pe180_p --> ocdca_p + h_p + 2agpe180_p pe181_p + h2o_p --> h_p + 2agpe181_p + ocdcea_p pg120_p + h2o_p --> 2agpg120_p + h_p + ddca_p h2o_p + pg140_p --> ttdca_p + 2agpg140_p + h_p h2o_p + pg141_p --> 2agpg141_p + h_p + ttdcea_p pg160_p + h2o_p --> hdca_p + 2agpg160_p + h_p pg161_p + h2o_p --> 2agpg161_p + h_p + hdcea_p h2o_p + pg180_p --> 2agpg180_p + h_p + ocdca_p h2o_p + pg181_p --> 2agpg181_p + h_p + ocdcea_p h2o_p + pa120_p --> h_p + 1ddecg3p_p + ddca_p pa140_p + h2o_p --> 1tdecg3p_p + h_p + ttdca_p h2o_p + pa141_p --> h_p + ttdcea_p + 1tdec7eg3p_p pa160_p + h2o_p --> 1hdecg3p_p + h_p + hdca_p h2o_p + pa161_p --> 1hdec9eg3p_p + h_p + hdcea_p h2o_p + pa180_p --> ocdca_p + 1odecg3p_p + h_p h2o_p + pa181_p --> h_p + 1odec11eg3p_p + ocdcea_p h2o_p + pe120_p --> 1agpe120_p + h_p + ddca_p pe140_p + h2o_p --> 1agpe140_p + h_p + ttdca_p h2o_p + pe141_p --> 1agpe141_p + h_p + ttdcea_p pe160_p + h2o_p --> hdca_p + h_p + 1agpe160_p h2o_p + pe161_p --> h_p + 1agpe161_p + hdcea_p h2o_p + pe180_p --> 1agpe180_p + h_p + ocdca_p h2o_p + pe181_p --> 1agpe181_p + h_p + ocdcea_p pg120_p + h2o_p --> 1agpg120_p + ddca_p + h_p h2o_p + pg140_p --> ttdca_p + h_p + 1agpg140_p pg141_p + h2o_p --> 1agpg141_p + h_p + ttdcea_p pg160_p + h2o_p --> hdca_p + h_p + 1agpg160_p pg161_p + h2o_p --> h_p + 1agpg161_p + hdcea_p h2o_p + pg180_p --> 1agpg180_p + h_p + ocdca_p h2o_p + pg181_p --> 1agpg181_p + h_p + ocdcea_p man1p_c <=> man6p_c h2o_c + 5aprbu_c --> pi_c + 4r5au_c h2o_c + pmeACP_c --> pimACP_c + meoh_c atp_c + 4ampm_c --> 2mahmp_c + adp_c atp_c + pnto_dsh_R_c --> adp_c + 4ppan_c + h_c pnto_dsh_R_p + na1_p --> na1_c + pnto_dsh_R_c pnto_dsh_R_e <=> pnto_dsh_R_p nadh_c + poaac_c --> h2o_c + nad_c + 3amac_c 2.0 flxso_c + pyr_c + coa_c <=> co2_c + h_c + 2.0 flxr_c + accoa_c h2o_c + pyr_c + q8_c --> q8h2_c + co2_c + ac_c h2o_c + ppi_c --> 2.0 pi_c + h_c h2o_c + pppi_c --> pi_c + h_c + ppi_c ppap_c + adp_c <=> ppa_c + atp_c ppal_e <=> ppal_p ppal_c <=> ppal_p na1_p + ppa_p --> na1_c + ppa_c ppa_e <=> ppa_p 2.0 5aop_c --> 2.0 h2o_c + ppbng_c + h_c co2_c + h2o_c + pep_c --> pi_c + h_c + oaa_c 4ppcys_c + h_c --> pan4p_c + co2_c atp_c + oaa_c --> adp_c + co2_c + pep_c ppcoa_c + succ_c --> ppa_c + succoa_c h2o_c + ppgpp_c --> gdp_c + ppi_c atp_c + ppi_c <=> adp_c + pppi_c atp_c + pi_c <=> adp_c + ppi_c r1p_c <=> r5p_c 2dr1p_c <=> 2dr5p_c 4ppan_c + ctp_c + cys_dsh_L_c --> h_c + ppi_c + 4ppcys_c + cmp_c nad_c + pphn_c --> nadh_c + 34hpp_c + co2_c pphn_c + h_c --> h2o_c + co2_c + phpyr_c 1.5 o2_c + pppg9_c --> 3.0 h2o_c + ppp9_c 3.0 fum_c + pppg9_c --> 3.0 succ_c + ppp9_c nadh_c + pppn_c + h_c + o2_c --> nad_c + cechddd_c h_p + pppn_p <=> pppn_c + h_c pppn_e <=> pppn_p h2o_c + pyr_c + atp_c --> amp_c + 2.0 h_c + pi_c + pep_c h2o_p + ppt_p --> pi_p + h2_p ppt_e <=> ppt_p gly_c + pram_c + atp_c <=> adp_c + pi_c + h_c + gar_c fpram_c + atp_c --> adp_c + pi_c + 2.0 h_c + air_c pran_c --> 2cpr5p_c h2o_c + prbamp_c --> prfp_c 5aizc_c + asp_dsh_L_c + atp_c --> adp_c + pi_c + 25aics_c + h_c h2o_c + prbatp_c --> prbamp_c + h_c + ppi_c fgam_c + h2o_c + atp_c + gln_dsh_L_c --> adp_c + pi_c + h_c + fpram_c + glu_dsh_L_c prfp_c <=> prlp_c pro_dsh_L_c + fad_c --> fadh2_c + h_c + 1pyr5c_c progly_p + h2o_c + atp_c --> progly_c + adp_c + pi_c + h_c progly_e <=> progly_p trnapro_c + pro_dsh_L_c + atp_c --> protrna_c + ppi_c + amp_c atp_c + h2o_c + pro_dsh_L_p --> adp_c + pi_c + h_c + pro_dsh_L_c h_p + pro_dsh_L_p <=> h_c + pro_dsh_L_c pro_dsh_L_p + na1_p --> na1_c + pro_dsh_L_c pro_dsh_L_e <=> pro_dsh_L_p atp_c + r5p_c <=> amp_c + prpp_c + h_c h_p + psclys_p --> psclys_c + h_c psclys_e <=> psclys_p skm5p_c + pep_c <=> pi_c + 3psme_c h_c + ps120_c --> co2_c + pe120_c ps140_c + h_c --> pe140_c + co2_c ps141_c + h_c --> co2_c + pe141_c ps160_c + h_c --> pe160_c + co2_c ps161_c + h_c --> pe161_c + co2_c ps180_c + h_c --> pe180_c + co2_c ps181_c + h_c --> pe181_c + co2_c glu_dsh_L_c + 3php_c --> pser_dsh_L_c + akg_c pser_dsh_L_e <=> pser_dsh_L_p h2o_c + pser_dsh_L_c --> pi_c + ser_dsh_L_c h2o_p + pser_dsh_L_p --> pi_p + ser_dsh_L_p ser_dsh_L_c + cdpdddecg_c --> cmp_c + h_c + ps120_c cdpdtdecg_c + ser_dsh_L_c --> cmp_c + h_c + ps140_c ser_dsh_L_c + cdpdtdec7eg_c --> cmp_c + h_c + ps141_c ser_dsh_L_c + cdpdhdecg_c --> ps160_c + cmp_c + h_c ser_dsh_L_c + cdpdhdec9eg_c --> cmp_c + ps161_c + h_c cdpdodecg_c + ser_dsh_L_c --> cmp_c + h_c + ps180_c ser_dsh_L_c + cdpdodec11eg_c --> cmp_c + ps181_c + h_c pi_c + ppcoa_c --> ppap_c + coa_c pi_c + accoa_c <=> actp_c + coa_c thrp_p + h2o_p --> pi_p + thr_dsh_L_p pan4p_c + atp_c + h_c --> dpcoa_c + ppi_c ptrc_p + orn_c <=> ptrc_c + orn_p ptrc_c + akg_c --> glu_dsh_L_c + 4abutn_c atp_c + h2o_c + ptrc_p --> adp_c + pi_c + h_c + ptrc_c ptrc_p + h_p --> ptrc_c + h_c ptrc_e <=> ptrc_p adn_c + pi_c <=> ade_c + r1p_c pi_c + dad_dsh_2_c <=> ade_c + 2dr1p_c pi_c + gsn_c <=> r1p_c + gua_c dgsn_c + pi_c <=> gua_c + 2dr1p_c ins_c + pi_c <=> hxan_c + r1p_c din_c + pi_c <=> hxan_c + 2dr1p_c pi_c + xtsn_c <=> xan_c + r1p_c o2_c + h2o_c + pyam5p_c --> h2o2_c + pydx5p_c + nh4_c atp_c + pydam_c --> pyam5p_c + adp_c + h_c pydam_e <=> pydam_p pydam_p --> pydam_c pydx_c + atp_c --> adp_c + h_c + pydx5p_c pydxn_c + atp_c --> pdx5p_c + adp_c + h_c pydxn_e <=> pydxn_p pydxn_p --> pydxn_c h2o_c + pydx5p_c --> pydx_c + pi_c pydx_e <=> pydx_p pydx_p --> pydx_c adp_c + h_c + pep_c --> pyr_c + atp_c uri_c + pi_c <=> r1p_c + ura_c nadh_c + h_c + o2_c + ura_c --> nad_c + uracp_c h_p + pyr_p <=> pyr_c + h_c pyr_e <=> pyr_p q8h2_c + 2.0 o2_c --> 2.0 o2s_c + q8_c + 2.0 h_c 2.0 o2_c + mql8_c --> mqn8_c + 2.0 o2s_c + 2.0 h_c quin_e <=> quin_p quin_p <=> quin_c quin_c + nad_c <=> nadh_c + 3dhq_c + 2.0 h_c iasp_c + dhap_c --> 2.0 h2o_c + pi_c + quln_c atp_c + r15bp_c --> adp_c + prpp_c r1p_c + atp_c --> adp_c + h_c + r15bp_c h2o_c + r5p_c --> rib_dsh_D_c + pi_c h2o_p + r5p_p --> pi_p + rib_dsh_D_p r5p_e <=> r5p_p atp_c + ribflv_c --> adp_c + fmn_c + h_c 4r5au_c + db4p_c --> 2.0 h2o_c + pi_c + dmlz_c 2.0 dmlz_c --> ribflv_c + 4r5au_c rib_dsh_D_c + atp_c --> adp_c + h_c + r5p_c atp_c + rbl_dsh_L_c --> adp_c + h_c + ru5p_dsh_L_c ru5p_dsh_L_c <=> xu5p_dsh_D_c rephaccoa_c <=> 2oxpaccoa_c rfamp_e <=> rfamp_p h_p + rfamp_p --> rfamp_e + h_c dtdprmn_c + kphphhlipa_c --> icolipa_c + h_c + dtdp_c rhcys_c --> hcys_dsh_L_c + dhptd_c h2o_c + rib_dsh_D_p + atp_c --> rib_dsh_D_c + adp_c + pi_c + h_c rib_dsh_D_e <=> rib_dsh_D_p rmn_c <=> rml_c rml_c + atp_c --> adp_c + rml1p_c + h_c rmn_e <=> rmn_p h_p + rmn_p --> h_c + rmn_c rml1p_c <=> dhap_c + lald_dsh_L_c trdrd_c + adp_c --> h2o_c + trdox_c + dadp_c grxrd_c + adp_c --> h2o_c + grxox_c + dadp_c gdp_c + trdrd_c --> dgdp_c + h2o_c + trdox_c gdp_c + grxrd_c --> grxox_c + h2o_c + dgdp_c trdrd_c + cdp_c --> dcdp_c + h2o_c + trdox_c grxrd_c + cdp_c --> h2o_c + grxox_c + dcdp_c trdrd_c + udp_c --> h2o_c + dudp_c + trdox_c grxrd_c + udp_c --> h2o_c + dudp_c + grxox_c atp_c + 2.0 h_c + 2.0 flxr_c --> datp_c + h2o_c + 2.0 flxso_c 2.0 h_c + gtp_c + 2.0 flxr_c --> 2.0 flxso_c + h2o_c + dgtp_c 2.0 h_c + ctp_c + 2.0 flxr_c --> dctp_c + 2.0 flxso_c + h2o_c utp_c + 2.0 flxr_c + 2.0 h_c --> 2.0 flxso_c + h2o_c + dutp_c ru5p_dsh_D_c <=> xu5p_dsh_D_c r5p_c <=> ru5p_dsh_D_c h2o_c + 5prdmbz_c --> pi_c + rdmbzi_c 2fe1s_c + atp_c + h2o_c + sufsesh_c + sufbcd_c --> adp_c + sufbcd_dsh_2fe2s_c + pi_c + 5.0 h_c + sufse_c sufbcd_c + 2.0 sufsesh_c + 2.0 fe2_c + atp_c + h2o_c + fadh2_c --> fad_c + pi_c + sufbcd_dsh_2fe2s_c + adp_c + 7.0 h_c + 2.0 sufse_c sufbcd_dsh_2fe2s_c + 2.0 sufsesh_c + 2.0 fe2_c + atp_c + h2o_c + fadh2_c --> pi_c + fad_c + adp_c + 7.0 h_c + sufbcd_dsh_2fe2s2_c + 2.0 sufse_c sufbcd_dsh_2fe2s_c + 4.0 h_c --> sufbcd_c + 2fe2s_c fadh2_c + 2.0 h_c + sufbcd_dsh_2fe2s2_c --> sufbcd_dsh_4fe4s_c + fad_c sufbcd_dsh_4fe4s_c + 4.0 h_c --> sufbcd_c + 4fe4s_c s7p_c --> gmhep7p_c 2.0 h2o_c + 2.0 h_c + sucarg_c --> co2_c + 2.0 nh4_c + sucorn_c atp_c + so4_c + h2o_c + gtp_c --> gdp_c + pi_c + aps_c + ppi_c h2o_c + o2_c + sarcs_c --> gly_c + h2o2_c + fald_c nad_c + sbt6p_c <=> nadh_c + h_c + f6p_c sbt_dsh_D_p + pep_c --> pyr_c + sbt6p_c sbt_dsh_D_e <=> sbt_dsh_D_p cys_dsh_L_c + sufse_c --> ala_dsh_L_c + sufsesh_c h2o_c + sl26da_c --> succ_c + 26dap_dsh_LL_c sl26da_c + akg_c <=> glu_dsh_L_c + sl2a6o_c selnp_c + sertrna_lb_sec_rb__c --> sectrna_c + pi_c + h_c 2.0 h_c + slnt_c + 4.0 gthrd_c --> gthox_c + dgslnt_c + 3.0 h2o_c h_c + dgslnt_c + nadph_c --> gslnt_c + nadp_c + gthrd_c gslnt_c + nadph_c --> nadp_c + seln_c + gthrd_c h2o_c + atp_c + seln_c --> selnp_c + amp_c + pi_c sel_c + mql8_c --> h2o_c + mqn8_c + slnt_c sel_e <=> sel_p 2.0 h_p + sel_p --> sel_c + 2.0 h_c ichor_c + h_c + akg_c --> 2sephchc_c + co2_c ser_dsh_L_c + h_c + atp_c <=> ppi_c + seramp_c ser_dsh_L_c + accoa_c <=> acser_c + coa_c ser_dsh_D_c --> pyr_c + nh4_c ser_dsh_L_c --> nh4_c + pyr_c atp_c + ser_dsh_L_c + trnaser_c --> amp_c + ppi_c + sertrna_c trnasecys_c + ser_dsh_L_c + atp_c --> amp_c + sertrna_lb_sec_rb__c + ppi_c h_p + ser_dsh_L_p <=> ser_dsh_L_c + h_c na1_p + ser_dsh_L_p --> na1_c + ser_dsh_L_c ser_dsh_L_e <=> ser_dsh_L_p h2o_c + Sfglutth_c --> for_c + h_c + gthrd_c h2o_c + sucglu_c --> glu_dsh_L_c + succ_c nad_c + sucgsa_c + h2o_c --> nadh_c + 2.0 h_c + sucglu_c 2sephchc_c --> 2shchc_c + pyr_c nad_c + dscl_c --> nadh_c + scl_c + h_c scl_c + fe2_c --> sheme_c + 3.0 h_c 3dhsk_c + nadph_c + h_c <=> nadp_c + skm_c atp_c + skm_c --> adp_c + skm5p_c + h_c suchms_c + cys_dsh_L_c --> succ_c + cyst_dsh_L_c + h_c skm_p + h_p --> h_c + skm_c skm_e <=> skm_p slnt_e <=> slnt_p h_p + slnt_p --> h_c + slnt_c so2_e <=> so2_p so2_p <=> so2_c so3_e <=> so3_p so4_p + h_p --> h_c + so4_c so4_e <=> so4_p akg_c + sucorn_c --> glu_dsh_L_c + sucgsa_c spmd_c + accoa_c --> N1aspmd_c + coa_c + h_c spmd_c + accoa_c --> coa_c + h_c + n8aspmd_c h2o_c + atp_c + spmd_p --> adp_c + pi_c + h_c + spmd_c spmd_c + h_p --> h_c + spmd_p spmd_e <=> spmd_p ametam_c + ptrc_c --> 5mta_c + spmd_c + h_c 2.0 o2s_c + 2.0 h_c --> o2_c + h2o2_c 2.0 h_p + 2.0 o2s_p --> h2o2_p + o2_p sucsal_c + nad_c + h2o_c --> nadh_c + 2.0 h_c + succ_c h2o_c + sucsal_c + nadp_c --> 2.0 h_c + nadph_c + succ_c asp_dsh_L_p + succ_c --> asp_dsh_L_c + succ_p sucbz_c + atp_c + coa_c --> amp_c + ppi_c + sbzcoa_c 2shchc_c --> h2o_c + sucbz_c 2.0 h_p + succ_p --> succ_c + 2.0 h_c 3.0 h_p + succ_p --> succ_c + 3.0 h_c succ_c + h_p --> succ_p + h_c succ_e <=> succ_p succ_c + q8_c --> q8h2_c + fum_c succ_c + fum_p --> succ_p + fum_c succ_c + mal_dsh_L_p --> mal_dsh_L_c + succ_p atp_c + succ_c + coa_c <=> adp_c + pi_c + succoa_c sucr_e <=> sucr_p succ_c + tartr_dsh_D_p --> succ_p + tartr_dsh_D_c sucr_p + pep_c --> pyr_c + suc6p_c h2o_c + atp_c + sulfac_p --> adp_c + pi_c + h_c + sulfac_c sulfac_e <=> sulfac_p 5.0 h_c + 3.0 nadph_c + so3_c --> 3.0 h2o_c + h2s_c + 3.0 nadp_c so4_p + h2o_c + atp_c --> adp_c + pi_c + h_c + so4_c tdec2eACP_c <=> cdec3eACP_c altrn_c + nad_c <=> nadh_c + tagur_c + h_c g3p_c + s7p_c <=> e4p_c + f6p_c tartr_dsh_L_c --> h2o_c + oaa_c tartr_dsh_D_e <=> tartr_dsh_D_p succ_c + tartr_dsh_L_p <=> tartr_dsh_L_c + succ_p tartr_dsh_L_e <=> tartr_dsh_L_p 3.0 h_p + tartr_dsh_D_p --> 3.0 h_c + tartr_dsh_D_c o2_c + akg_c + taur_c --> aacald_c + h_c + succ_c + co2_c + so3_c h2o_c + atp_c + taur_p --> adp_c + pi_c + h_c + taur_c taur_e <=> taur_p tcynt_e <=> tcynt_p h2o_c + thmpp_c --> thmmp_c + pi_c + h_c dtdp4addg_c + accoa_c --> coa_c + dtdp4aaddg_c + h_c glu_dsh_L_c + dtdp4d6dg_c --> dtdp4addg_c + akg_c dtdp4d6dg_c --> dtdp4d6dm_c dtdp4d6dm_c + h_c + nadph_c --> nadp_c + dtdprmn_c dtdpglu_c --> h2o_c + dtdp4d6dg_c atp_c + lipidAds_c --> adp_c + lipidA_c + h_c dsbdrd_c + dsbcox_p --> dsbcrd_p + dsbdox_c dsbdrd_c + dsbgox_p --> dsbgrd_p + dsbdox_c tagdp_dsh_D_c <=> g3p_c + dhap_c nadh_c + 2.0 h_p + nadp_c --> nad_c + 2.0 h_c + nadph_c h2o_c + succoa_c + thdp_c --> coa_c + sl2a6o_c h2o_c + methf_c --> 5fthf_c + h_c trdrd_c + h2o2_c --> 2.0 h2o_c + trdox_c h_p + thymd_p --> h_c + thymd_c h_p + thymd_p <=> h_c + thymd_c thymd_e <=> thymd_p h2o_c + thm_p + atp_c --> adp_c + pi_c + h_c + thm_c thm_e <=> thm_p athr_dsh_L_c --> gly_c + acald_c thr_dsh_L_c --> gly_c + acald_c nad_c + thr_dsh_L_c --> nadh_c + 2aobut_c + h_c thr_dsh_L_c --> 2obut_c + nh4_c thrp_e <=> thrp_p h2o_c + phom_c --> pi_c + thr_dsh_L_c thr_dsh_L_c + atp_c + trnathr_c --> amp_c + ppi_c + thrtrna_c thr_dsh_L_p + h2o_c + atp_c --> pi_c + h_c + adp_c + thr_dsh_L_c h_p + thr_dsh_L_c --> thr_dsh_L_p + h_c h_p + thr_dsh_L_p <=> h_c + thr_dsh_L_c thr_dsh_L_p + na1_p --> na1_c + thr_dsh_L_c thr_dsh_L_e <=> thr_dsh_L_p thym_c + h_p --> h_c + thym_p thym_e <=> thym_p dxyl5p_c + nadph_c + atp_c + h_c + iscssh_c + dhgly_c --> co2_c + amp_c + ppi_c + 2.0 h2o_c + 4mpetz_c + nadp_c + iscs_c xu5p_dsh_D_c + r5p_c <=> g3p_c + s7p_c e4p_c + xu5p_dsh_D_c <=> g3p_c + f6p_c h_c + tmao_c + mql8_c --> mqn8_c + h2o_c + tma_c h_p + tmao_p + mql8_c --> mqn8_c + h2o_p + tma_p 2dmmql8_c + h_c + tmao_c --> h2o_c + tma_c + 2dmmq8_c h_p + 2dmmql8_c + tmao_p --> h2o_p + 2dmmq8_c + tma_p tmao_e <=> tmao_p tma_e <=> tma_p atp_c + thymd_c --> adp_c + dtmp_c + h_c thymd_c + pi_c <=> thym_c + 2dr1p_c mlthf_c + dump_c --> dtmp_c + dhf_c atp_c + thm_c --> thmmp_c + adp_c + h_c thmmp_c + atp_c --> thmpp_c + adp_c 2mahmp_c + h_c + 4mpetz_c --> thmmp_c + ppi_c dhap_c <=> g3p_c dpcoa_c + atp_c --> ade_c + 2tpr3dpcoa_c trdox_c + h_c + nadph_c --> nadp_c + trdrd_c h2o_c + tre6p_c --> g6p_c + glc_dsh_D_c h2o_c + tre6p_c --> pi_c + tre_c g6p_c + udpg_c --> udp_c + h_c + tre6p_c h2o_c + tre_c --> 2.0 glc_dsh_D_c h2o_p + tre_p --> 2.0 glc_dsh_D_p tre_p + pep_c --> pyr_c + tre6p_c tre_e <=> tre_p h2o_c + trp_dsh_L_c <=> pyr_c + nh4_c + indole_c ser_dsh_L_c + 3ig3p_c --> h2o_c + g3p_c + trp_dsh_L_c ser_dsh_L_c + indole_c --> h2o_c + trp_dsh_L_c 3ig3p_c --> g3p_c + indole_c trnatrp_c + atp_c + trp_dsh_L_c --> trptrna_c + amp_c + ppi_c trp_dsh_L_p + h_p <=> h_c + trp_dsh_L_c trp_dsh_L_e <=> trp_dsh_L_p nadh_c + 2h3oppan_c + h_c <=> nad_c + glyc_dsh_R_c tsul_p + h2o_c + atp_c --> adp_c + pi_c + h_c + tsul_c tsul_e <=> tsul_p ttdca_e --> ttdca_p ttdcea_e --> ttdcea_p ttrcyc_e <=> ttrcyc_p ttrcyc_p + h_p --> ttrcyc_e + h_c tungs_p + h2o_c + atp_c --> adp_c + tungs_c + pi_c + h_c tungs_e <=> tungs_p tym_e <=> tym_p nadph_c + tyr_dsh_L_c + amet_c --> dad_dsh_5_c + h_c + dhgly_c + 4crsol_c + met_dsh_L_c + nadp_c o2_p + h2o_p + tym_p --> nh4_p + 4hoxpacd_p + h2o2_p h2o_p + tyrp_p --> pi_p + tyr_dsh_L_p tyrp_e <=> tyrp_p tyr_dsh_L_c + akg_c <=> glu_dsh_L_c + 34hpp_c trnatyr_c + atp_c + tyr_dsh_L_c --> amp_c + tyrtrna_c + ppi_c h_p + tyr_dsh_L_p <=> tyr_dsh_L_c + h_c tyr_dsh_L_e <=> tyr_dsh_L_p thmpp_c + adp_c + h_c --> athtp_c + pi_c 3hmrsACP_c + u3hga_c --> h_c + ACP_c + u23ga_c uamag_c + atp_c + 26dap_dsh_M_c --> adp_c + pi_c + h_c + ugmd_c udpacgal_p + h2o_p --> ump_p + acgal1p_p + 2.0 h_p h2o_p + uacgam_p --> 2.0 h_p + ump_p + acgam1p_p uacgam_e <=> uacgam_p 2.0 nad_c + h2o_c + uacmam_c --> 2.0 nadh_c + 3.0 h_c + uacmamu_c uacgam_c <=> uacmam_c uacgam_c + 3hmrsACP_c <=> u3aga_c + ACP_c uacgam_c + pep_c --> pi_c + uaccg_c acgam1p_c + utp_c + h_c --> uacgam_c + ppi_c uacgam_c + uagmda_c --> udp_c + h_c + uaagmda_c glu_dsh_D_c + atp_c + uama_c --> uamag_c + pi_c + h_c + adp_c uamr_c + ala_dsh_L_c + atp_c --> adp_c + pi_c + h_c + uama_c uaccg_c + h_c + nadph_c --> nadp_c + uamr_c h2o_c + udcpdp_c --> pi_c + h_c + udcpp_c frdp_c + 8.0 ipdp_c --> udcpdp_c + 8.0 ppi_c udcpdp_p + h2o_p --> pi_p + h_p + udcpp_p udcpp_p --> udcpp_c udpacgal_e <=> udpacgal_p udpg_c <=> udpgal_c udpgal_c --> udpgalfur_c h2o_p + udpgal_p --> ump_p + 2.0 h_p + gal1p_p udpgal_e <=> udpgal_p 2.0 nad_c + h2o_c + udpg_c --> 2.0 nadh_c + udpglcur_c + 3.0 h_c nad_c + udpglcur_c --> nadh_c + co2_c + udpLa4o_c udpglcur_e <=> udpglcur_p h2o_p + udpg_p --> g1p_p + ump_p + 2.0 h_p udpg_e <=> udpg_p glu_dsh_L_c + udpLa4o_c <=> udpLa4n_c + akg_c udpglcur_p + h2o_p --> glcur1p_p + ump_p + 2.0 h_p gal1p_c + udpg_c <=> udpgal_c + g1p_c 2.0 h_c + urdglyc_c + h2o_c --> co2_c + 2.0 nh4_c + glx_c alaala_c + ugmd_c + atp_c --> ugmda_c + adp_c + pi_c + h_c h2o_c + u3aga_c --> ac_c + u3hga_c 10fthf_c + udpLa4n_c --> udpLa4fn_c + h_c + thf_c uLa4n_c --> uLa4n_p LalaDgluMdap_c + uamr_c + atp_c --> pi_c + h_c + ugmd_c + adp_c h2o_c + um4p_c --> ugmd_c + ala_dsh_D_c uamr_c + LalaDgluMdapDala_c + atp_c --> adp_c + pi_c + h_c + um4p_c atp_c + ump_c <=> adp_c + udp_c ump_e <=> ump_p h2o_c + uLa4fn_c --> uLa4n_c + for_c udpLa4fn_c + udcpp_c --> udp_c + uLa4fn_c uppg3_c + 2.0 amet_c --> 2.0 ahcys_c + dscl_c + h_c hmbil_c --> h2o_c + uppg3_c uppg3_c + 4.0 h_c --> 4.0 co2_c + cpppg3_c ura_c + prpp_c --> ump_c + ppi_c h2o_c + uracp_c --> cbm_c + poaac_c + h_c h_p + ura_p --> h_c + ura_c h_p + ura_p <=> h_c + ura_c ura_e <=> ura_p nad_c + urdglyc_c --> nadh_c + oxur_c + h_c urea_e <=> urea_p urea_p <=> urea_c o2_c + urate_c + 2.0 h2o_c --> co2_c + h2o2_c + alltn_c h2o_c + uri_c --> rib_dsh_D_c + ura_c gtp_c + uri_c --> gdp_c + h_c + ump_c uri_p + h_p --> uri_c + h_c uri_p + h_p <=> uri_c + h_c uri_e <=> uri_p h2o_c + u23ga_c --> lipidX_c + 2.0 h_c + ump_c akg_c + val_dsh_L_c <=> glu_dsh_L_c + 3mob_c trnaval_c + atp_c + val_dsh_L_c --> amp_c + ppi_c + valtrna_c val_dsh_L_p + h2o_c + atp_c --> adp_c + pi_c + h_c + val_dsh_L_c h_p + val_dsh_L_p <=> h_c + val_dsh_L_c val_dsh_L_e <=> val_dsh_L_p ala_dsh_L_c + 3mob_c <=> pyr_c + val_dsh_L_c tungs_c + 2.0 h_c + mptamp_c --> wco_c + amp_c + h2o_c + cu2_c xu5p_dsh_L_c --> ru5p_dsh_L_c nad_c + h2o_c + xan_c --> nadh_c + h_c + urate_c xan_p + h_p --> xan_c + h_c xan_e <=> xan_p xan_p <=> xan_c xmp_e <=> xmp_p xan_c + prpp_c --> xmp_c + ppi_c h2o_c + xtsn_c --> rib_dsh_D_c + xan_c h_p + xtsn_p <=> xtsn_c + h_c xtsn_e <=> xtsn_p xyl_dsh_D_c <=> xylu_dsh_D_c glc_dsh_D_c <=> fru_c xylu_dsh_D_c + atp_c --> adp_c + h_c + xu5p_dsh_D_c atp_c + xylu_dsh_L_c --> adp_c + h_c + xu5p_dsh_L_c h_p + xylu_dsh_L_p --> h_c + xylu_dsh_L_c xylu_dsh_L_e <=> xylu_dsh_L_p xyl_dsh_D_p + h2o_c + atp_c --> adp_c + h_c + xyl_dsh_D_c + pi_c h_p + xyl_dsh_D_p --> xyl_dsh_D_c + h_c xyl_dsh_D_e <=> xyl_dsh_D_p atp_c + zn2_c + h2o_c --> adp_c + pi_c + zn2_p + h_c h_p + zn2_c --> zn2_p + h_c zn2_p --> zn2_c atp_c + h2o_c + zn2_p --> adp_c + pi_c + h_c + zn2_c zn2_e <=> zn2_p

Step 2: Simulate a model

The model can be simulated by executing model.solve().

solution = model.solve()

A quick overview of the solution can be obtained in form of a pandas DataFrame (all solution objects in cameo provide access to data frames through a data_frame attribute).

solution

	fluxes	reduced_costs
DM_4CRSOL	0.000219	0.000219
DM_5DRIB	0.000221	0.000221
DM_AACALD	0.000000	0.000000
DM_AMOB	0.000002	0.000002
...	...	...
ZN2t3pp	0.000000	0.000000
ZN2tpp	0.000335	0.000335
ZNabcpp	0.000000	0.000000
Zn2tex	0.000335	0.000335

2583 rows × 2 columns

The data frame is accessible through solution.data_frame.

solution.data_frame

	fluxes	reduced_costs
DM_4CRSOL	0.000219	0.000219
DM_5DRIB	0.000221	0.000221
DM_AACALD	0.000000	0.000000
DM_AMOB	0.000002	0.000002
...	...	...
ZN2t3pp	0.000000	0.000000
ZN2tpp	0.000335	0.000335
ZNabcpp	0.000000	0.000000
Zn2tex	0.000335	0.000335

2583 rows × 2 columns

Data frames make it very easy to process results. For example, let’s take a look at reactions with flux != 0

solution.data_frame.query('fluxes != 0')

	fluxes	reduced_costs
DM_4CRSOL	0.000219	0.000219
DM_5DRIB	0.000221	0.000221
DM_AMOB	0.000002	0.000002
DM_MTHTHF	0.000440	0.000440
...	...	...
USHD	0.019113	0.019113
VALTA	-0.415702	-0.415702
ZN2tpp	0.000335	0.000335
Zn2tex	0.000335	0.000335

446 rows × 2 columns

Step 3: Exploring a model

Objects—models, reactions, metabolites, genes—can easily be explored in the Jupyter notebook, taking advantage of tab completion. For example, place your cursor after the period in model.reactions. and press the TAB key. A dialog will appear that allows you to navigate the list of reactions encoded in the model.

model.reactions. # place your cursor after the period and press the TAB key.

For example, you can access the E4PD (Erythrose 4-phosphate dehydrogenase) reaction in the model.

model.reactions.E4PD

Id	E4PD
Name	Erythrose 4-phosphate dehydrogenase
Stoichiometry	nad_c + h2o_c + e4p_c <=> nadh_c + 2.0 h_c + 4per_c
Lower bound	-1000.000000
Upper bound	1000.000000

Be aware though that due variable naming restrictions in Python dot notation access to reactions (and other objects) might not work in some cases.

model.reactions.12DGR120tipp

  File "<ipython-input-11-fa7ea4193315>", line 1
    model.reactions.12DGR120tipp
                     ^
SyntaxError: invalid syntax

In these cases you need to use the model.reactions.get_by_id.

model.reactions.get_by_id('12DGR120tipp')

Id	12DGR120tipp
Name	1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C12:0)
Stoichiometry	12dgr120_p --> 12dgr120_c
Lower bound	0.000000
Upper bound	1000.000000

Metabolites are accessible through model.metabolites. For example, D-glucose in the cytosolic compartment.

model.metabolites.glc_dsh_D_c

<Metabolite glc_dsh_D_c at 0x112a22f98>

A list of the genes encoded in the model can be accessed via model.genes.

model.genes

[<Gene b1377 at 0x112b65208>,
 <Gene b2215 at 0x112b65240>,
 <Gene b0929 at 0x112b651d0>,
 <Gene b0241 at 0x112b65278>,
 <Gene b4033 at 0x112b65588>,
 <Gene b4034 at 0x112b65630>,
 <Gene b4032 at 0x112b655c0>,
 <Gene b4035 at 0x112b655f8>,
 <Gene b4036 at 0x112b65518>,
 <Gene b4213 at 0x112b65cc0>,
 <Gene b2835 at 0x112b65f98>,
 <Gene b2836 at 0x112b6ea58>,
 <Gene b3553 at 0x112b78898>,
 <Gene b1134 at 0x112b78c88>,
 <Gene b0446 at 0x112b78cc0>,
 <Gene b1009 at 0x112b78e48>,
 <Gene b0954 at 0x112b7f400>,
 <Gene b0180 at 0x112b7f3c8>,
 <Gene b0347 at 0x112b7fe48>,
 <Gene b3580 at 0x112b88240>,
 <Gene b1093 at 0x112b886a0>,
 <Gene b2323 at 0x112b8e240>,
 <Gene b1095 at 0x112b8e278>,
 <Gene b1397 at 0x112b8eba8>,
 <Gene b1246 at 0x112b8ee80>,
 <Gene b1247 at 0x112b8ef28>,
 <Gene b1329 at 0x112b8eeb8>,
 <Gene b1244 at 0x112b8ef60>,
 <Gene b1245 at 0x112b8eef0>,
 <Gene b1386 at 0x112b96208>,
 <Gene b0004 at 0x112b96400>,
 <Gene b1192 at 0x112b964e0>,
 <Gene b1243 at 0x112b96748>,
 <Gene b4266 at 0x112b96908>,
 <Gene b4265 at 0x112b96a20>,
 <Gene b0159 at 0x112b96c50>,
 <Gene b3197 at 0x112b96f98>,
 <Gene b2708 at 0x112b96f60>,
 <Gene b1094 at 0x112b9d128>,
 <Gene b4481 at 0x112b9d908>,
 <Gene b1927 at 0x112b9da20>,
 <Gene b3571 at 0x112b9db38>,
 <Gene b2901 at 0x112b9dc88>,
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 <Gene b2877 at 0x114a8b208>,
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 <Gene b0009 at 0x114a8b828>,
 <Gene b2519 at 0x114a8bb00>,
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 <Gene b0785 at 0x114a8bbe0>,
 <Gene b0826 at 0x114a8bd68>,
 <Gene b1008 at 0x114a8be80>,
 <Gene b0529 at 0x114a91320>,
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 <Gene b1059 at 0x114a916a0>,
 <Gene b3996 at 0x114a91d30>,
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 <Gene b1109 at 0x114a91e10>,
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 <Gene b2283 at 0x114a9a668>,
 <Gene b2284 at 0x114a9a470>,
 <Gene b2286 at 0x114a9a4a8>,
 <Gene b2288 at 0x114a9a6a0>,
 <Gene b2279 at 0x114a9a6d8>,
 <Gene b2285 at 0x114a9a4e0>,
 <Gene b2282 at 0x114a9a518>,
 <Gene b2281 at 0x114a9a710>,
 <Gene b2276 at 0x114a9a550>,
 <Gene b2277 at 0x114a9a588>,
 <Gene b2287 at 0x114a9a5c0>,
 <Gene b2278 at 0x114a9a5f8>,
 <Gene b2615 at 0x114a9a438>,
 <Gene b3028 at 0x114a9ae10>,
 <Gene b1740 at 0x114a9f198>,
 <Gene b3962 at 0x114a9f390>,
 <Gene b1603 at 0x114a9f3c8>,
 <Gene b1602 at 0x114a9f358>,
 <Gene b0931 at 0x114a9f438>,
 <Gene b1186 at 0x114a9f518>,
 <Gene b0019 at 0x114a9f5f8>,
 <Gene b2518 at 0x114a9f9e8>,
 <Gene b0451 at 0x114aa8278>,
 <Gene b2710 at 0x114aa8390>,
 <Gene b2711 at 0x114aa83c8>,
 <Gene b3479 at 0x114aa8a58>,
 <Gene b3478 at 0x114aa8a90>,
 <Gene b3480 at 0x114aa8ac8>,
 <Gene b3476 at 0x114aa8b00>,
 <Gene b3477 at 0x114aa8b38>,
 <Gene b0639 at 0x114aa8ba8>,
 <Gene b4390 at 0x114aa8b70>,
 <Gene b0751 at 0x114aa8cf8>,
 <Gene b1768 at 0x114aa8fd0>,
 <Gene b1991 at 0x114aaf208>,
 <Gene b0109 at 0x114aaf320>,
 <Gene b3367 at 0x114aaf4a8>,
 <Gene b1223 at 0x114aaf470>,
 <Gene b2205 at 0x114aaf908>,
 <Gene b2202 at 0x114aaf898>,
 <Gene b2203 at 0x114aaf940>,
 <Gene b2204 at 0x114aaf8d0>,
 ...]

A few additional attributes have been added that are not available in a cobrapy model. For example, exchange reactions that allow certain metabolites to enter or leave the model can be accessed through model.exchanges.

model.exchanges

[<Reaction DM_4CRSOL at 0x112d5a4e0>,
 <Reaction DM_5DRIB at 0x112d5a518>,
 <Reaction DM_AACALD at 0x112d5a550>,
 <Reaction DM_AMOB at 0x112d5a358>,
 <Reaction DM_MTHTHF at 0x112d5a390>,
 <Reaction DM_OXAM at 0x112d5a3c8>,
 <Reaction EX_12ppd_dsh_R_lp_e_rp_ at 0x112d5a240>,
 <Reaction EX_12ppd_dsh_S_lp_e_rp_ at 0x112d5a278>,
 <Reaction EX_14glucan_lp_e_rp_ at 0x112d5a2b0>,
 <Reaction EX_15dap_lp_e_rp_ at 0x112d5a2e8>,
 <Reaction EX_23camp_lp_e_rp_ at 0x112d5a320>,
 <Reaction EX_23ccmp_lp_e_rp_ at 0x112d5a048>,
 <Reaction EX_23cgmp_lp_e_rp_ at 0x112d5a0f0>,
 <Reaction EX_23cump_lp_e_rp_ at 0x112d5a1d0>,
 <Reaction EX_23dappa_lp_e_rp_ at 0x112d5a208>,
 <Reaction EX_26dap_dsh_M_lp_e_rp_ at 0x11215dbe0>,
 <Reaction EX_2ddglcn_lp_e_rp_ at 0x11215dcf8>,
 <Reaction EX_34dhpac_lp_e_rp_ at 0x11215de10>,
 <Reaction EX_3amp_lp_e_rp_ at 0x11215def0>,
 <Reaction EX_3cmp_lp_e_rp_ at 0x11215deb8>,
 <Reaction EX_3gmp_lp_e_rp_ at 0x11215de80>,
 <Reaction EX_3hcinnm_lp_e_rp_ at 0x1121cf400>,
 <Reaction EX_3hpp_lp_e_rp_ at 0x1121cfac8>,
 <Reaction EX_3hpppn_lp_e_rp_ at 0x1121cff28>,
 <Reaction EX_3ump_lp_e_rp_ at 0x1121cfa90>,
 <Reaction EX_4abut_lp_e_rp_ at 0x1121cfb70>,
 <Reaction EX_4hoxpacd_lp_e_rp_ at 0x1121cf550>,
 <Reaction EX_5dglcn_lp_e_rp_ at 0x1121cf080>,
 <Reaction EX_5mtr_lp_e_rp_ at 0x1121cf128>,
 <Reaction EX_LalaDglu_lp_e_rp_ at 0x1121cf518>,
 <Reaction EX_LalaDgluMdap_lp_e_rp_ at 0x1121cf4e0>,
 <Reaction EX_LalaDgluMdapDala_lp_e_rp_ at 0x1121cf208>,
 <Reaction EX_LalaLglu_lp_e_rp_ at 0x1121cf470>,
 <Reaction EX_ac_lp_e_rp_ at 0x1121cf438>,
 <Reaction EX_acac_lp_e_rp_ at 0x1121cf240>,
 <Reaction EX_acald_lp_e_rp_ at 0x1121cf278>,
 <Reaction EX_acgal_lp_e_rp_ at 0x1121cf0f0>,
 <Reaction EX_acgal1p_lp_e_rp_ at 0x1121cf2e8>,
 <Reaction EX_acgam_lp_e_rp_ at 0x1121cf3c8>,
 <Reaction EX_acgam1p_lp_e_rp_ at 0x1121cf2b0>,
 <Reaction EX_acmana_lp_e_rp_ at 0x1121cf358>,
 <Reaction EX_acmum_lp_e_rp_ at 0x1121cf4a8>,
 <Reaction EX_acnam_lp_e_rp_ at 0x1121cf0b8>,
 <Reaction EX_acolipa_lp_e_rp_ at 0x1121cf390>,
 <Reaction EX_acser_lp_e_rp_ at 0x1121cf320>,
 <Reaction EX_ade_lp_e_rp_ at 0x1121533c8>,
 <Reaction EX_adn_lp_e_rp_ at 0x112153400>,
 <Reaction EX_adocbl_lp_e_rp_ at 0x112153390>,
 <Reaction EX_ag_lp_e_rp_ at 0x1121532b0>,
 <Reaction EX_agm_lp_e_rp_ at 0x1121539b0>,
 <Reaction EX_akg_lp_e_rp_ at 0x112153320>,
 <Reaction EX_ala_dsh_B_lp_e_rp_ at 0x112153da0>,
 <Reaction EX_ala_dsh_D_lp_e_rp_ at 0x112153240>,
 <Reaction EX_ala_dsh_L_lp_e_rp_ at 0x1121535c0>,
 <Reaction EX_alaala_lp_e_rp_ at 0x112153518>,
 <Reaction EX_all_dsh_D_lp_e_rp_ at 0x1121731d0>,
 <Reaction EX_alltn_lp_e_rp_ at 0x10734a240>,
 <Reaction EX_amp_lp_e_rp_ at 0x112b0d400>,
 <Reaction EX_anhgm_lp_e_rp_ at 0x112b0d320>,
 <Reaction EX_arab_dsh_L_lp_e_rp_ at 0x112b0d278>,
 <Reaction EX_arbt_lp_e_rp_ at 0x112a5a240>,
 <Reaction EX_arbtn_lp_e_rp_ at 0x112a5a6a0>,
 <Reaction EX_arbtn_dsh_fe3_lp_e_rp_ at 0x114823908>,
 <Reaction EX_arg_dsh_L_lp_e_rp_ at 0x112a81160>,
 <Reaction EX_ascb_dsh_L_lp_e_rp_ at 0x112a814a8>,
 <Reaction EX_asn_dsh_L_lp_e_rp_ at 0x112a73400>,
 <Reaction EX_aso3_lp_e_rp_ at 0x11482bda0>,
 <Reaction EX_asp_dsh_L_lp_e_rp_ at 0x112a9b320>,
 <Reaction EX_btn_lp_e_rp_ at 0x112a9bd30>,
 <Reaction EX_but_lp_e_rp_ at 0x112a9b780>,
 <Reaction EX_butso3_lp_e_rp_ at 0x112a9b8d0>,
 <Reaction EX_ca2_lp_e_rp_ at 0x112a9b278>,
 <Reaction EX_cbi_lp_e_rp_ at 0x112a34eb8>,
 <Reaction EX_cbl1_lp_e_rp_ at 0x112a34668>,
 <Reaction EX_cd2_lp_e_rp_ at 0x112a34b00>,
 <Reaction EX_cgly_lp_e_rp_ at 0x112a34550>,
 <Reaction EX_chol_lp_e_rp_ at 0x112a34cc0>,
 <Reaction EX_chtbs_lp_e_rp_ at 0x112a3b438>,
 <Reaction EX_cit_lp_e_rp_ at 0x112a3b4a8>,
 <Reaction EX_cl_lp_e_rp_ at 0x112a3b358>,
 <Reaction EX_cm_lp_e_rp_ at 0x112a04898>,
 <Reaction EX_cmp_lp_e_rp_ at 0x112a046d8>,
 <Reaction EX_co2_lp_e_rp_ at 0x112a04f98>,
 <Reaction EX_cobalt2_lp_e_rp_ at 0x112a04a58>,
 <Reaction EX_colipa_lp_e_rp_ at 0x112a04b38>,
 <Reaction EX_colipap_lp_e_rp_ at 0x112a04978>,
 <Reaction EX_cpgn_lp_e_rp_ at 0x112aae470>,
 <Reaction EX_cpgn_dsh_un_lp_e_rp_ at 0x112aaec50>,
 <Reaction EX_crn_lp_e_rp_ at 0x112aae358>,
 <Reaction EX_crn_dsh_D_lp_e_rp_ at 0x112aaee10>,
 <Reaction EX_csn_lp_e_rp_ at 0x112aaef60>,
 <Reaction EX_cu_lp_e_rp_ at 0x112aae6a0>,
 <Reaction EX_cu2_lp_e_rp_ at 0x112aaea90>,
 <Reaction EX_cyan_lp_e_rp_ at 0x112ad6f28>,
 <Reaction EX_cynt_lp_e_rp_ at 0x112ad6518>,
 <Reaction EX_cys_dsh_D_lp_e_rp_ at 0x112ad6c18>,
 <Reaction EX_cys_dsh_L_lp_e_rp_ at 0x112ad6470>,
 <Reaction EX_cytd_lp_e_rp_ at 0x112ad6198>,
 <Reaction EX_dad_dsh_2_lp_e_rp_ at 0x112ad6668>,
 <Reaction EX_damp_lp_e_rp_ at 0x112ad6780>,
 <Reaction EX_dca_lp_e_rp_ at 0x112a4da20>,
 <Reaction EX_dcmp_lp_e_rp_ at 0x112a4d160>,
 <Reaction EX_dcyt_lp_e_rp_ at 0x112a4dfd0>,
 <Reaction EX_ddca_lp_e_rp_ at 0x112a4d898>,
 <Reaction EX_dgmp_lp_e_rp_ at 0x112a0b2b0>,
 <Reaction EX_dgsn_lp_e_rp_ at 0x112a0b470>,
 <Reaction EX_dha_lp_e_rp_ at 0x112a0bc50>,
 <Reaction EX_dimp_lp_e_rp_ at 0x112a0b128>,
 <Reaction EX_din_lp_e_rp_ at 0x112a0b390>,
 <Reaction EX_dms_lp_e_rp_ at 0x11483a5c0>,
 <Reaction EX_dmso_lp_e_rp_ at 0x11483a1d0>,
 <Reaction EX_dopa_lp_e_rp_ at 0x112a287b8>,
 <Reaction EX_doxrbcn_lp_e_rp_ at 0x112a28dd8>,
 <Reaction EX_dtmp_lp_e_rp_ at 0x112a28630>,
 <Reaction EX_dump_lp_e_rp_ at 0x112ad0f98>,
 <Reaction EX_duri_lp_e_rp_ at 0x112ad0940>,
 <Reaction EX_eca4colipa_lp_e_rp_ at 0x112ad07f0>,
 <Reaction EX_enlipa_lp_e_rp_ at 0x112ad05c0>,
 <Reaction EX_enter_lp_e_rp_ at 0x112ad04e0>,
 <Reaction EX_etha_lp_e_rp_ at 0x112ad0c18>,
 <Reaction EX_ethso3_lp_e_rp_ at 0x112ad0d68>,
 <Reaction EX_etoh_lp_e_rp_ at 0x112ad0710>,
 <Reaction EX_f6p_lp_e_rp_ at 0x112ad0fd0>,
 <Reaction EX_fald_lp_e_rp_ at 0x112a6bc18>,
 <Reaction EX_fe2_lp_e_rp_ at 0x112a6bb70>,
 <Reaction EX_fe3_lp_e_rp_ at 0x112a6bf60>,
 <Reaction EX_fe3dcit_lp_e_rp_ at 0x112a7cfd0>,
 <Reaction EX_fe3dhbzs_lp_e_rp_ at 0x112a7c908>,
 <Reaction EX_fe3hox_lp_e_rp_ at 0x112a7ce10>,
 <Reaction EX_fe3hox_dsh_un_lp_e_rp_ at 0x112a7c6d8>,
 <Reaction EX_fecrm_lp_e_rp_ at 0x112a7cf60>,
 <Reaction EX_fecrm_dsh_un_lp_e_rp_ at 0x112a7cef0>,
 <Reaction EX_feenter_lp_e_rp_ at 0x112a7cbe0>,
 <Reaction EX_feoxam_lp_e_rp_ at 0x112a7c2e8>,
 <Reaction EX_feoxam_dsh_un_lp_e_rp_ at 0x112a7ccc0>,
 <Reaction EX_for_lp_e_rp_ at 0x114848160>,
 <Reaction EX_fru_lp_e_rp_ at 0x114848828>,
 <Reaction EX_frulys_lp_e_rp_ at 0x114848f60>,
 <Reaction EX_fruur_lp_e_rp_ at 0x112adcb00>,
 <Reaction EX_fuc_dsh_L_lp_e_rp_ at 0x112adcd68>,
 <Reaction EX_fum_lp_e_rp_ at 0x112adc198>,
 <Reaction EX_fusa_lp_e_rp_ at 0x112adc128>,
 <Reaction EX_g1p_lp_e_rp_ at 0x112adcc50>,
 <Reaction EX_g3pc_lp_e_rp_ at 0x112a97630>,
 <Reaction EX_g3pe_lp_e_rp_ at 0x112a974e0>,
 <Reaction EX_g3pg_lp_e_rp_ at 0x112a97ac8>,
 <Reaction EX_g3pi_lp_e_rp_ at 0x112a97be0>,
 <Reaction EX_g3ps_lp_e_rp_ at 0x112a97748>,
 <Reaction EX_g6p_lp_e_rp_ at 0x112a97f28>,
 <Reaction EX_gal_lp_e_rp_ at 0x112a97dd8>,
 <Reaction EX_gal_dsh_bD_lp_e_rp_ at 0x112a1c518>,
 <Reaction EX_gal1p_lp_e_rp_ at 0x112a1c0f0>,
 <Reaction EX_galct_dsh_D_lp_e_rp_ at 0x112a1c358>,
 <Reaction EX_galctn_dsh_D_lp_e_rp_ at 0x112a1ca20>,
 <Reaction EX_galctn_dsh_L_lp_e_rp_ at 0x112a1ce10>,
 <Reaction EX_galt_lp_e_rp_ at 0x112a1cba8>,
 <Reaction EX_galur_lp_e_rp_ at 0x112a1c438>,
 <Reaction EX_gam_lp_e_rp_ at 0x112ae2240>,
 <Reaction EX_gam6p_lp_e_rp_ at 0x112ae2ef0>,
 <Reaction EX_gbbtn_lp_e_rp_ at 0x112ae2898>,
 <Reaction EX_gdp_lp_e_rp_ at 0x112ae2588>,
 <Reaction EX_glc_lp_e_rp_ at 0x112ae2940>,
 <Reaction EX_glcn_lp_e_rp_ at 0x112ae2da0>,
 <Reaction EX_glcr_lp_e_rp_ at 0x112ae2438>,
 <Reaction EX_glcur_lp_e_rp_ at 0x112ae2128>,
 <Reaction EX_glcur1p_lp_e_rp_ at 0x112a87898>,
 <Reaction EX_gln_dsh_L_lp_e_rp_ at 0x112a879b0>,
 <Reaction EX_glu_dsh_L_lp_e_rp_ at 0x112a87128>,
 <Reaction EX_gly_lp_e_rp_ at 0x112a877b8>,
 <Reaction EX_glyald_lp_e_rp_ at 0x112a876a0>,
 <Reaction EX_glyb_lp_e_rp_ at 0x112a87dd8>,
 <Reaction EX_glyc_lp_e_rp_ at 0x112a87a90>,
 <Reaction EX_glyc_dsh_R_lp_e_rp_ at 0x112a8c438>,
 <Reaction EX_glyc2p_lp_e_rp_ at 0x112a8c668>,
 <Reaction EX_glyc3p_lp_e_rp_ at 0x112a8c588>,
 <Reaction EX_glyclt_lp_e_rp_ at 0x112a8c7b8>,
 <Reaction EX_gmp_lp_e_rp_ at 0x112a8ccc0>,
 <Reaction EX_gsn_lp_e_rp_ at 0x112a8cd30>,
 <Reaction EX_gthox_lp_e_rp_ at 0x112a8ce48>,
 <Reaction EX_gthrd_lp_e_rp_ at 0x112a8cbe0>,
 <Reaction EX_gtp_lp_e_rp_ at 0x112a8ca90>,
 <Reaction EX_gua_lp_e_rp_ at 0x112a8c358>,
 <Reaction EX_h_lp_e_rp_ at 0x112a5f4a8>,
 <Reaction EX_h2_lp_e_rp_ at 0x112a5ff28>,
 <Reaction EX_h2o_lp_e_rp_ at 0x112a5fe48>,
 <Reaction EX_h2o2_lp_e_rp_ at 0x112a5f8d0>,
 <Reaction EX_h2s_lp_e_rp_ at 0x112a5f9b0>,
 <Reaction EX_hacolipa_lp_e_rp_ at 0x112a5f5c0>,
 <Reaction EX_halipa_lp_e_rp_ at 0x112a5fcc0>,
 <Reaction EX_hdca_lp_e_rp_ at 0x112a16fd0>,
 <Reaction EX_hdcea_lp_e_rp_ at 0x112a16b38>,
 <Reaction EX_hg2_lp_e_rp_ at 0x112a16f28>,
 <Reaction EX_his_dsh_L_lp_e_rp_ at 0x112aa4e10>,
 <Reaction EX_hom_dsh_L_lp_e_rp_ at 0x112aa4240>,
 <Reaction EX_hxa_lp_e_rp_ at 0x112aa43c8>,
 <Reaction EX_hxan_lp_e_rp_ at 0x112aa4a58>,
 <Reaction EX_idon_dsh_L_lp_e_rp_ at 0x112aa4fd0>,
 <Reaction EX_ile_dsh_L_lp_e_rp_ at 0x112a10da0>,
 <Reaction EX_imp_lp_e_rp_ at 0x112a10e48>,
 <Reaction EX_indole_lp_e_rp_ at 0x112a106a0>,
 <Reaction EX_inost_lp_e_rp_ at 0x112a104a8>,
 <Reaction EX_ins_lp_e_rp_ at 0x112af14a8>,
 <Reaction EX_isetac_lp_e_rp_ at 0x112af1668>,
 <Reaction EX_k_lp_e_rp_ at 0x112af10f0>,
 <Reaction EX_kdo2lipid4_lp_e_rp_ at 0x112af1d30>,
 <Reaction EX_lac_dsh_D_lp_e_rp_ at 0x112af1ef0>,
 <Reaction EX_lac_dsh_L_lp_e_rp_ at 0x112af1780>,
 <Reaction EX_lcts_lp_e_rp_ at 0x112af1fd0>,
 <Reaction EX_leu_dsh_L_lp_e_rp_ at 0x112af1dd8>,
 <Reaction EX_lipa_lp_e_rp_ at 0x112ab8550>,
 <Reaction EX_lipa_cold_lp_e_rp_ at 0x112ab88d0>,
 <Reaction EX_lipoate_lp_e_rp_ at 0x112ab8630>,
 <Reaction EX_lys_dsh_L_lp_e_rp_ at 0x112ab8b70>,
 <Reaction EX_lyx_dsh_L_lp_e_rp_ at 0x112ab8278>,
 <Reaction EX_mal_dsh_D_lp_e_rp_ at 0x112ab87b8>,
 <Reaction EX_mal_dsh_L_lp_e_rp_ at 0x112ab8978>,
 <Reaction EX_malt_lp_e_rp_ at 0x112aa07f0>,
 <Reaction EX_malthx_lp_e_rp_ at 0x112aa01d0>,
 <Reaction EX_maltpt_lp_e_rp_ at 0x112aa06d8>,
 <Reaction EX_malttr_lp_e_rp_ at 0x112aa0518>,
 <Reaction EX_maltttr_lp_e_rp_ at 0x112aa09b0>,
 <Reaction EX_man_lp_e_rp_ at 0x112aa0c18>,
 <Reaction EX_man6p_lp_e_rp_ at 0x112aa02b0>,
 <Reaction EX_manglyc_lp_e_rp_ at 0x112aa0da0>,
 <Reaction EX_melib_lp_e_rp_ at 0x112aa0438>,
 <Reaction EX_meoh_lp_e_rp_ at 0x112aa0f60>,
 <Reaction EX_met_dsh_D_lp_e_rp_ at 0x112aa05f8>,
 <Reaction EX_met_dsh_L_lp_e_rp_ at 0x112a902e8>,
 <Reaction EX_metsox_dsh_R_dsh_L_lp_e_rp_ at 0x112a90208>,
 <Reaction EX_metsox_dsh_S_dsh_L_lp_e_rp_ at 0x112a90dd8>,
 <Reaction EX_mg2_lp_e_rp_ at 0x112a90ba8>,
 <Reaction EX_mincyc_lp_e_rp_ at 0x112a90d68>,
 <Reaction EX_minohp_lp_e_rp_ at 0x112a90400>,
 <Reaction EX_mmet_lp_e_rp_ at 0x112a90160>,
 <Reaction EX_mn2_lp_e_rp_ at 0x112a90898>,
 <Reaction EX_mnl_lp_e_rp_ at 0x112a42710>,
 <Reaction EX_mobd_lp_e_rp_ at 0x112a420f0>,
 <Reaction EX_mso3_lp_e_rp_ at 0x112a42e10>,
 <Reaction EX_n2o_lp_e_rp_ at 0x112a42f98>,
 <Reaction EX_na1_lp_e_rp_ at 0x112a429e8>,
 <Reaction EX_nac_lp_e_rp_ at 0x112aaacc0>,
 <Reaction EX_nh4_lp_e_rp_ at 0x112aaada0>,
 <Reaction EX_ni2_lp_e_rp_ at 0x112aaa128>,
 <Reaction EX_nmn_lp_e_rp_ at 0x112aaab38>,
 <Reaction EX_no_lp_e_rp_ at 0x112aaa390>,
 <Reaction EX_no2_lp_e_rp_ at 0x112aaa550>,
 <Reaction EX_no3_lp_e_rp_ at 0x112aaa9e8>,
 <Reaction EX_novbcn_lp_e_rp_ at 0x112aaa710>,
 <Reaction EX_o16a4colipa_lp_e_rp_ at 0x112aaa668>,
 <Reaction EX_o2_lp_e_rp_ at 0x112aaa438>,
 <Reaction EX_o2s_lp_e_rp_ at 0x112aaa940>,
 <Reaction EX_ocdca_lp_e_rp_ at 0x112aaafd0>,
 <Reaction EX_ocdcea_lp_e_rp_ at 0x112aaa828>,
 <Reaction EX_octa_lp_e_rp_ at 0x112afd9e8>,
 <Reaction EX_orn_lp_e_rp_ at 0x112afdc18>,
 <Reaction EX_orot_lp_e_rp_ at 0x112afd8d0>,
 <Reaction EX_pacald_lp_e_rp_ at 0x112afdf60>,
 <Reaction EX_peamn_lp_e_rp_ at 0x112a22630>,
 <Reaction EX_phe_dsh_L_lp_e_rp_ at 0x112a22c50>,
 <Reaction EX_pheme_lp_e_rp_ at 0x112a22198>,
 <Reaction EX_pi_lp_e_rp_ at 0x112a22f28>,
 <Reaction EX_pnto_dsh_R_lp_e_rp_ at 0x112a22240>,
 <Reaction EX_ppa_lp_e_rp_ at 0x112a22550>,
 <Reaction EX_ppal_lp_e_rp_ at 0x112a22a90>,
 <Reaction EX_pppn_lp_e_rp_ at 0x112a22080>,
 <Reaction EX_ppt_lp_e_rp_ at 0x112b04898>,
 <Reaction EX_pro_dsh_L_lp_e_rp_ at 0x112b04a90>,
 <Reaction EX_progly_lp_e_rp_ at 0x112b04208>,
 <Reaction EX_psclys_lp_e_rp_ at 0x112b04940>,
 <Reaction EX_pser_dsh_L_lp_e_rp_ at 0x112b046d8>,
 <Reaction EX_ptrc_lp_e_rp_ at 0x112b04e80>,
 <Reaction EX_pydam_lp_e_rp_ at 0x112b04518>,
 <Reaction EX_pydx_lp_e_rp_ at 0x112b043c8>,
 <Reaction EX_pydxn_lp_e_rp_ at 0x112acaa58>,
 <Reaction EX_pyr_lp_e_rp_ at 0x112aca2e8>,
 <Reaction EX_quin_lp_e_rp_ at 0x112acab38>,
 <Reaction EX_r5p_lp_e_rp_ at 0x112acaef0>,
 <Reaction EX_rfamp_lp_e_rp_ at 0x112aca978>,
 <Reaction EX_rib_dsh_D_lp_e_rp_ at 0x112aca860>,
 <Reaction EX_rmn_lp_e_rp_ at 0x112ab3d68>,
 <Reaction EX_sbt_dsh_D_lp_e_rp_ at 0x112ab3ac8>,
 <Reaction EX_sel_lp_e_rp_ at 0x112ab3518>,
 <Reaction EX_ser_dsh_D_lp_e_rp_ at 0x112ab3160>,
 <Reaction EX_ser_dsh_L_lp_e_rp_ at 0x112ab3320>,
 <Reaction EX_skm_lp_e_rp_ at 0x112ab3ef0>,
 <Reaction EX_slnt_lp_e_rp_ at 0x112ab33c8>,
 <Reaction EX_so2_lp_e_rp_ at 0x112b07f98>,
 <Reaction EX_so3_lp_e_rp_ at 0x112b07fd0>,
 <Reaction EX_so4_lp_e_rp_ at 0x112b07320>,
 <Reaction EX_spmd_lp_e_rp_ at 0x112b07e80>,
 <Reaction EX_succ_lp_e_rp_ at 0x112b074a8>,
 <Reaction EX_sucr_lp_e_rp_ at 0x112b07be0>,
 <Reaction EX_sulfac_lp_e_rp_ at 0x112b07cf8>,
 <Reaction EX_tartr_dsh_D_lp_e_rp_ at 0x112b077f0>,
 <Reaction EX_tartr_dsh_L_lp_e_rp_ at 0x112a48898>,
 <Reaction EX_taur_lp_e_rp_ at 0x112a48978>,
 <Reaction EX_tcynt_lp_e_rp_ at 0x112a48f60>,
 <Reaction EX_thm_lp_e_rp_ at 0x112a48630>,
 <Reaction EX_thr_dsh_L_lp_e_rp_ at 0x112a48518>,
 <Reaction EX_thrp_lp_e_rp_ at 0x112a48f28>,
 <Reaction EX_thym_lp_e_rp_ at 0x112a48be0>,
 <Reaction EX_thymd_lp_e_rp_ at 0x112a48c88>,
 <Reaction EX_tma_lp_e_rp_ at 0x112a48b00>,
 <Reaction EX_tmao_lp_e_rp_ at 0x112a482b0>,
 <Reaction EX_tre_lp_e_rp_ at 0x112a48390>,
 <Reaction EX_trp_dsh_L_lp_e_rp_ at 0x112a48dd8>,
 <Reaction EX_tsul_lp_e_rp_ at 0x112a65c50>,
 <Reaction EX_ttdca_lp_e_rp_ at 0x112a65278>,
 <Reaction EX_ttdcea_lp_e_rp_ at 0x112a657b8>,
 <Reaction EX_ttrcyc_lp_e_rp_ at 0x112a652b0>,
 <Reaction EX_tungs_lp_e_rp_ at 0x112a65a58>,
 <Reaction EX_tym_lp_e_rp_ at 0x112a65b00>,
 <Reaction EX_tyr_dsh_L_lp_e_rp_ at 0x114850d30>,
 <Reaction EX_tyrp_lp_e_rp_ at 0x114850f98>,
 <Reaction EX_uacgam_lp_e_rp_ at 0x114850e10>,
 <Reaction EX_udpacgal_lp_e_rp_ at 0x114850908>,
 <Reaction EX_udpg_lp_e_rp_ at 0x114850c50>,
 <Reaction EX_udpgal_lp_e_rp_ at 0x114850b38>,
 <Reaction EX_udpglcur_lp_e_rp_ at 0x114850668>,
 <Reaction EX_ump_lp_e_rp_ at 0x114850518>,
 <Reaction EX_ura_lp_e_rp_ at 0x114850f60>,
 <Reaction EX_urea_lp_e_rp_ at 0x1148419b0>,
 <Reaction EX_uri_lp_e_rp_ at 0x1148413c8>,
 <Reaction EX_val_dsh_L_lp_e_rp_ at 0x114841780>,
 <Reaction EX_xan_lp_e_rp_ at 0x1148412e8>,
 <Reaction EX_xmp_lp_e_rp_ at 0x114841a58>,
 <Reaction EX_xtsn_lp_e_rp_ at 0x114841630>,
 <Reaction EX_xyl_dsh_D_lp_e_rp_ at 0x114841208>,
 <Reaction EX_xylu_dsh_L_lp_e_rp_ at 0x112a53710>,
 <Reaction EX_zn2_lp_e_rp_ at 0x112a53fd0>]

Or, the current medium can be accessed through model.medium.

model.medium

	reaction_id	reaction_name	lower_bound	upper_bound
0	EX_ca2_lp_e_rp_	Calcium exchange	-1000.00	1000
1	EX_cbl1_lp_e_rp_	Cob(I)alamin exchange	-0.01	1000
2	EX_cl_lp_e_rp_	Chloride exchange	-1000.00	1000
3	EX_co2_lp_e_rp_	CO2 exchange	-1000.00	1000
...	...	...	...	...
21	EX_slnt_lp_e_rp_	selenite exchange	-1000.00	1000
22	EX_so4_lp_e_rp_	Sulfate exchange	-1000.00	1000
23	EX_tungs_lp_e_rp_	tungstate exchange	-1000.00	1000
24	EX_zn2_lp_e_rp_	Zinc exchange	-1000.00	1000

25 rows × 4 columns

It is also possible to get a list of essential reactions ...

model.essential_reactions()

[<Reaction DM_4CRSOL at 0x112d5a4e0>,
 <Reaction DM_5DRIB at 0x112d5a518>,
 <Reaction DM_AMOB at 0x112d5a358>,
 <Reaction DM_MTHTHF at 0x112d5a390>,
 <Reaction Ec_biomass_iJO1366_core_53p95M at 0x112d5a438>,
 <Reaction EX_ca2_lp_e_rp_ at 0x112a9b278>,
 <Reaction EX_cl_lp_e_rp_ at 0x112a3b358>,
 <Reaction EX_cobalt2_lp_e_rp_ at 0x112a04a58>,
 <Reaction EX_cu2_lp_e_rp_ at 0x112aaea90>,
 <Reaction EX_glc_lp_e_rp_ at 0x112ae2940>,
 <Reaction EX_k_lp_e_rp_ at 0x112af10f0>,
 <Reaction EX_meoh_lp_e_rp_ at 0x112aa0f60>,
 <Reaction EX_mg2_lp_e_rp_ at 0x112a90ba8>,
 <Reaction EX_mn2_lp_e_rp_ at 0x112a90898>,
 <Reaction EX_mobd_lp_e_rp_ at 0x112a420f0>,
 <Reaction EX_nh4_lp_e_rp_ at 0x112aaada0>,
 <Reaction EX_ni2_lp_e_rp_ at 0x112aaa128>,
 <Reaction EX_pi_lp_e_rp_ at 0x112a22f28>,
 <Reaction EX_so4_lp_e_rp_ at 0x112b07320>,
 <Reaction EX_zn2_lp_e_rp_ at 0x112a53fd0>,
 <Reaction 3OAR140 at 0x114bed630>,
 <Reaction 3OAS140 at 0x114be5da0>,
 <Reaction 5DOAN at 0x114bdf0b8>,
 <Reaction A5PISO at 0x114bdfe10>,
 <Reaction ACCOAC at 0x114bc8080>,
 <Reaction ACGK at 0x114bc8748>,
 <Reaction ACGS at 0x114bc8780>,
 <Reaction ACHBS at 0x114bc87b8>,
 <Reaction ACLS at 0x114bc8518>,
 <Reaction ACODA at 0x114bc0da0>,
 <Reaction ACONTa at 0x114bc0ba8>,
 <Reaction ACONTb at 0x114bc0b38>,
 <Reaction ACOTA at 0x114bc0be0>,
 <Reaction ADCL at 0x114bc0400>,
 <Reaction ADCS at 0x114bc0390>,
 <Reaction ADSK at 0x114bb2ba8>,
 <Reaction ADSL1r at 0x114bb2be0>,
 <Reaction ADSL2r at 0x114bb2a58>,
 <Reaction ADSS at 0x114bb2908>,
 <Reaction AGPAT160 at 0x114bb2390>,
 <Reaction AGPAT161 at 0x114bab080>,
 <Reaction AGPR at 0x114babe10>,
 <Reaction AHCYSNS at 0x114babcf8>,
 <Reaction AICART at 0x114babc88>,
 <Reaction AIRC2 at 0x114babd30>,
 <Reaction AIRC3 at 0x114babcc0>,
 <Reaction ALAALAr at 0x114bab898>,
 <Reaction ALAR at 0x114bab630>,
 <Reaction AMAOTr at 0x114b9d828>,
 <Reaction AMPMS2 at 0x114b9d4e0>,
 <Reaction ANPRT at 0x114b9d390>,
 <Reaction ANS at 0x114b9d3c8>,
 <Reaction AOXSr2 at 0x114b9d0b8>,
 <Reaction APRAUR at 0x114b95940>,
 <Reaction ARGSL at 0x114b8db00>,
 <Reaction ARGSS at 0x114b8db38>,
 <Reaction ASAD at 0x114b8d4a8>,
 <Reaction ASP1DC at 0x114b84da0>,
 <Reaction ASPCT at 0x114b84dd8>,
 <Reaction ASPK at 0x114b84b70>,
 <Reaction ASPTA at 0x114b84908>,
 <Reaction ATPPRT at 0x114b84518>,
 <Reaction BMOCOS at 0x114b7c828>,
 <Reaction BMOGDS1 at 0x114b7c860>,
 <Reaction BMOGDS2 at 0x114b7c438>,
 <Reaction BPNT at 0x114b78198>,
 <Reaction BTS5 at 0x114b78b70>,
 <Reaction CA2tex at 0x114b78320>,
 <Reaction CAt6pp at 0x114b78240>,
 <Reaction CDPMEK at 0x114b724a8>,
 <Reaction CHORM at 0x114b66d30>,
 <Reaction CHORS at 0x114b66cc0>,
 <Reaction CHRPL at 0x114b66d68>,
 <Reaction CLt3_2pp at 0x114b66588>,
 <Reaction CLtex at 0x114b665c0>,
 <Reaction COBALT2tex at 0x114b66320>,
 <Reaction COBALT2tpp at 0x114b5feb8>,
 <Reaction CPMPS at 0x114b5f630>,
 <Reaction CS at 0x114b5bcc0>,
 <Reaction CTPS2 at 0x114b54ac8>,
 <Reaction CU2tex at 0x114b54978>,
 <Reaction CU2tpp at 0x114b547f0>,
 <Reaction CYSS at 0x114b4bf60>,
 <Reaction CYSTL at 0x114b4bcc0>,
 <Reaction DAPDC at 0x114b3da20>,
 <Reaction DAPE at 0x114b3d940>,
 <Reaction DASYN160 at 0x114b3d278>,
 <Reaction DASYN161 at 0x114b3d2b0>,
 <Reaction DB4PS at 0x114b37ef0>,
 <Reaction DBTS at 0x114b37f98>,
 <Reaction DDPA at 0x114b37908>,
 <Reaction DHAD1 at 0x114b31ef0>,
 <Reaction DHAD2 at 0x114b31e80>,
 <Reaction DHDPRy at 0x114b31940>,
 <Reaction DHDPS at 0x114b318d0>,
 <Reaction DHFR at 0x114b31748>,
 <Reaction DHFS at 0x114b31518>,
 <Reaction DHNPA2r at 0x114b2ae80>,
 <Reaction DHORTS at 0x114b2a550>,
 <Reaction DHPPDA2 at 0x114b2a518>,
 <Reaction DHPS2 at 0x114b2a5c0>,
 <Reaction DHPTDCs2 at 0x114b2a400>,
 <Reaction DHQS at 0x114b2a0b8>,
 <Reaction DHQTi at 0x114b230b8>,
 <Reaction DMATT at 0x114b23550>,
 <Reaction DNMPPA at 0x114b19e80>,
 <Reaction DNTPPA at 0x114b19dd8>,
 <Reaction DPCOAK at 0x114b19a90>,
 <Reaction DPR at 0x114b199e8>,
 <Reaction DTMPK at 0x114b19278>,
 <Reaction DXPRIi at 0x114b11c50>,
 <Reaction DXPS at 0x114b11ba8>,
 <Reaction E4PD at 0x114b117f0>,
 <Reaction EGMEACPR at 0x114b02c18>,
 <Reaction EPMEACPR at 0x114b02748>,
 <Reaction FCLT at 0x114ae2e10>,
 <Reaction FMNAT at 0x114ace748>,
 <Reaction G1PACT at 0x114abf9e8>,
 <Reaction G1SAT at 0x114abf898>,
 <Reaction G3PD2 at 0x114abf320>,
 <Reaction G5SADs at 0x114ab7c50>,
 <Reaction GCALDD at 0x114aa8a20>,
 <Reaction GF6PTA at 0x114aa8518>,
 <Reaction GK1 at 0x114a9ffd0>,
 <Reaction GLNS at 0x114a9ac18>,
 <Reaction GLUPRT at 0x114a9a7f0>,
 <Reaction GLUR at 0x114a9aa20>,
 <Reaction GLUTRR at 0x114a9a898>,
 <Reaction GLUTRS at 0x114a9a8d0>,
 <Reaction GMPS2 at 0x114a84978>,
 <Reaction GRTT at 0x114a7dfd0>,
 <Reaction GTPCI at 0x114a7d898>,
 <Reaction GTPCII2 at 0x114a7d8d0>,
 <Reaction HBZOPT at 0x114a73278>,
 <Reaction HCO3E at 0x114a73048>,
 <Reaction HISTD at 0x114a6b278>,
 <Reaction HISTP at 0x114a6b208>,
 <Reaction HMBS at 0x114a63f28>,
 <Reaction HPPK2 at 0x114a636a0>,
 <Reaction HSDy at 0x114a634a8>,
 <Reaction HSK at 0x114a633c8>,
 <Reaction HSST at 0x114a63278>,
 <Reaction HSTPT at 0x114a63320>,
 <Reaction ICDHyr at 0x114a5cc50>,
 <Reaction ICYSDS at 0x114a5c390>,
 <Reaction IG3PS at 0x114a5c240>,
 <Reaction IGPDH at 0x114a5c1d0>,
 <Reaction IGPS at 0x114a54198>,
 <Reaction ILETA at 0x114a54ef0>,
 <Reaction IMPC at 0x114a54e48>,
 <Reaction IPMD at 0x114a54400>,
 <Reaction IPPMIa at 0x114a544a8>,
 <Reaction IPPMIb at 0x114a54438>,
 <Reaction IPPS at 0x114a542e8>,
 <Reaction K2L4Aabcpp at 0x114a54358>,
 <Reaction K2L4Aabctex at 0x114a54080>,
 <Reaction KARA1 at 0x114a54160>,
 <Reaction KARA2 at 0x114a54128>,
 <Reaction KDOCT2 at 0x114a4ce80>,
 <Reaction KDOPP at 0x114a4cf60>,
 <Reaction KDOPS at 0x114a4cf98>,
 <Reaction Ktex at 0x114a4ce10>,
 <Reaction LEUTAi at 0x114a43b70>,
 <Reaction LPADSS at 0x114a3bf60>,
 <Reaction MALCOAMT at 0x114a24c18>,
 <Reaction MCOATA at 0x114a16828>,
 <Reaction MCTP1App at 0x114a16780>,
 <Reaction MECDPDH5 at 0x114a16320>,
 <Reaction MECDPS at 0x114a0f080>,
 <Reaction MEOHtex at 0x114a0f978>,
 <Reaction MEOHtrpp at 0x114a0f898>,
 <Reaction MEPCT at 0x114a0f7f0>,
 <Reaction METAT at 0x114a0f748>,
 <Reaction METS at 0x114a0f4e0>,
 <Reaction MG2tex at 0x114a07cf8>,
 <Reaction MNtex at 0x1149f9f60>,
 <Reaction MOADSUx at 0x1149f9f98>,
 <Reaction MOAT at 0x1149f9b70>,
 <Reaction MOAT2 at 0x1149f9e80>,
 <Reaction MOBDabcpp at 0x1149f9eb8>,
 <Reaction MOBDtex at 0x1149f9ac8>,
 <Reaction MOCOS at 0x1149f9b38>,
 <Reaction MOHMT at 0x1149f9c18>,
 <Reaction MPTAT at 0x1149f9cc0>,
 <Reaction MPTG at 0x1149f9d68>,
 <Reaction MPTS at 0x1149f9668>,
 <Reaction MPTSS at 0x1149f96a0>,
 <Reaction MTHFR2 at 0x1149f2dd8>,
 <Reaction MTHTHFSs at 0x1149f2e10>,
 <Reaction NADK at 0x1149eb438>,
 <Reaction NADS1 at 0x1149ebbe0>,
 <Reaction NDPK2 at 0x1149eb4e0>,
 <Reaction NDPK4 at 0x1149e57b8>,
 <Reaction NH4tex at 0x1149e53c8>,
 <Reaction NH4tpp at 0x1149db400>,
 <Reaction NI2tex at 0x1149dbe80>,
 <Reaction NNATr at 0x1149dba20>,
 <Reaction NNDPR at 0x1149db940>,
 <Reaction OCBT at 0x1149bf198>,
 <Reaction OCTDPS at 0x1149b6080>,
 <Reaction OGMEACPD at 0x1149b6da0>,
 <Reaction OGMEACPR at 0x1149b6d30>,
 <Reaction OGMEACPS at 0x1149b6d68>,
 <Reaction OHPBAT at 0x1149b6be0>,
 <Reaction OMCDC at 0x1149b6ac8>,
 <Reaction OMPDC at 0x1149b69e8>,
 <Reaction OPHBDC at 0x1149b64a8>,
 <Reaction OPMEACPD at 0x1149b6320>,
 <Reaction OPMEACPR at 0x1149b6278>,
 <Reaction OPMEACPS at 0x1149b62b0>,
 <Reaction ORPT at 0x1149b0320>,
 <Reaction P5CR at 0x1149b0e80>,
 <Reaction PANTS at 0x1149b0b38>,
 <Reaction PAPPT3 at 0x1149a9b70>,
 <Reaction PDX5PS at 0x1149a4908>,
 <Reaction PE160abcpp at 0x1149a4a20>,
 <Reaction PE161abcpp at 0x1149a4a58>,
 <Reaction PERD at 0x1149a4668>,
 <Reaction PGAMT at 0x11499be10>,
 <Reaction PHETA1 at 0x11498ea20>,
 <Reaction PItex at 0x11498e8d0>,
 <Reaction PMDPHT at 0x11497e208>,
 <Reaction PMEACPE at 0x11497e240>,
 <Reaction PMPK at 0x11497e1d0>,
 <Reaction PNTK at 0x11497e0f0>,
 <Reaction PPBNGS at 0x114977d30>,
 <Reaction PPCDC at 0x114977d68>,
 <Reaction PPNCL2 at 0x114977ac8>,
 <Reaction PPND at 0x114977978>,
 <Reaction PPNDH at 0x114977908>,
 <Reaction PRAGSr at 0x1149770b8>,
 <Reaction PRAIS at 0x11496f128>,
 <Reaction PRAIi at 0x11496ffd0>,
 <Reaction PRAMPC at 0x11496ff98>,
 <Reaction PRASCSi at 0x11496fef0>,
 <Reaction PRATPP at 0x11496ff28>,
 <Reaction PRFGS at 0x11496fe48>,
 <Reaction PRMICI at 0x11496fe80>,
 <Reaction PSCVT at 0x11496f4a8>,
 <Reaction PSD160 at 0x11496f240>,
 <Reaction PSD161 at 0x11496f1d0>,
 <Reaction PSSA160 at 0x114967b00>,
 <Reaction PSSA161 at 0x114967a90>,
 <Reaction PTPATi at 0x1149676d8>,
 <Reaction QULNS at 0x114950fd0>,
 <Reaction RBFK at 0x114950dd8>,
 <Reaction RBFSa at 0x114950b38>,
 <Reaction RBFSb at 0x114950be0>,
 <Reaction RHCCE at 0x114950588>,
 <Reaction SADT2 at 0x114947438>,
 <Reaction SDPDS at 0x114940e10>,
 <Reaction SDPTA at 0x114940b38>,
 <Reaction SERAT at 0x11493a860>,
 <Reaction SHCHD2 at 0x11493a198>,
 <Reaction SHCHF at 0x11493a0f0>,
 <Reaction SHK3Dr at 0x11493a0b8>,
 <Reaction SHKK at 0x11493a048>,
 <Reaction SHSL1 at 0x11492f080>,
 <Reaction SO4tex at 0x11492fb00>,
 <Reaction SULRi at 0x1149287f0>,
 <Reaction TDSK at 0x1149214e0>,
 <Reaction THDPS at 0x114921390>,
 <Reaction THRD_L at 0x11491ab00>,
 <Reaction THRS at 0x11491aa20>,
 <Reaction THZPSN3 at 0x11491a2b0>,
 <Reaction TMDS at 0x114914898>,
 <Reaction TMPK at 0x1149146d8>,
 <Reaction TMPPP at 0x114914668>,
 <Reaction TYRL at 0x114906550>,
 <Reaction TYRTA at 0x1149064e0>,
 <Reaction U23GAAT at 0x1148ffd68>,
 <Reaction UAAGDS at 0x1148ffdd8>,
 <Reaction UAGAAT at 0x1148ffbe0>,
 <Reaction UAGCVT at 0x1148ffc18>,
 <Reaction UAGDP at 0x1148ffc50>,
 <Reaction UAGPT3 at 0x1148ff278>,
 <Reaction UAMAGS at 0x1148ff208>,
 <Reaction UAMAS at 0x1148ff0b8>,
 <Reaction UAPGR at 0x1148ff080>,
 <Reaction UDCPDP at 0x1148ff0f0>,
 <Reaction UDCPDPS at 0x1148ff128>,
 <Reaction UGMDDS at 0x1148f1198>,
 <Reaction UHGADA at 0x1148f11d0>,
 <Reaction UMPK at 0x1148eaa90>,
 <Reaction UPP3MT at 0x1148ea908>,
 <Reaction UPP3S at 0x1148ea898>,
 <Reaction UPPDC1 at 0x1148ea8d0>,
 <Reaction USHD at 0x1148e3940>,
 <Reaction Zn2tex at 0x1148d5e10>]

... and essential genes.

model.essential_genes()

[<Gene b0420 at 0x1149140b8>,
 <Gene b2400 at 0x1149b0160>,
 <Gene b2153 at 0x1149d4160>,
 <Gene b0475 at 0x114940198>,
 <Gene b4245 at 0x11486c1d0>,
 <Gene b3939 at 0x114b84208>,
 <Gene b1277 at 0x1149d4278>,
 <Gene b2574 at 0x11486c2b0>,
 <Gene b0774 at 0x112bf8358>,
 <Gene b1281 at 0x114adc3c8>,
 <Gene b2530 at 0x114a00400>,
 <Gene b2472 at 0x114b78400>,
 <Gene b1288 at 0x1149144a8>,
 <Gene b0777 at 0x114a4c4e0>,
 <Gene b3807 at 0x114a00518>,
 <Gene b1098 at 0x11490c550>,
 <Gene b3994 at 0x112bf8588>,
 <Gene b2019 at 0x1148705f8>,
 <Gene b3040 at 0x1148885f8>,
 <Gene b1093 at 0x112b886a0>,
 <Gene b1092 at 0x114a5c710>,
 <Gene b3843 at 0x114adc7f0>,
 <Gene b2311 at 0x114adc828>,
 <Gene b0928 at 0x11486c898>,
 <Gene b3634 at 0x114b44898>,
 <Gene b1136 at 0x114a009b0>,
 <Gene b0179 at 0x114bc89b0>,
 <Gene b2600 at 0x114890a20>,
 <Gene b2599 at 0x114890a58>,
 <Gene b0784 at 0x114a84a90>,
 <Gene b0085 at 0x114bc8ac8>,
 <Gene b3633 at 0x114a84b38>,
 <Gene b2329 at 0x114890b70>,
 <Gene b0639 at 0x114aa8ba8>,
 <Gene b4039 at 0x114890c50>,
 <Gene b0750 at 0x114b54cc0>,
 <Gene b0827 at 0x114870cf8>,
 <Gene b1208 at 0x114888d68>,
 <Gene b3368 at 0x114b7cda0>,
 <Gene b1263 at 0x112bf8e48>,
 <Gene b3607 at 0x114b78f28>,
 <Gene b0173 at 0x11490cf60>,
 <Gene b3991 at 0x114bc0f98>,
 <Gene b1264 at 0x112bf8fd0>,
 <Gene b0417 at 0x114bb9048>,
 <Gene b2320 at 0x114af90b8>,
 <Gene b1094 at 0x112b9d128>,
 <Gene b2021 at 0x1149f9128>,
 <Gene b0182 at 0x114a31128>,
 <Gene b4040 at 0x1149e5160>,
 <Gene b2762 at 0x114af1160>,
 <Gene b1415 at 0x114995198>,
 <Gene b0915 at 0x114ba51d0>,
 <Gene b3993 at 0x114bb9198>,
 <Gene b0908 at 0x114b3d320>,
 <Gene b4160 at 0x114b3d400>,
 <Gene b3941 at 0x114a914e0>,
 <Gene b3850 at 0x114b31668>,
 <Gene b0031 at 0x1148f1748>,
 <Gene b0524 at 0x114be5748>,
 <Gene b0166 at 0x114ba57b8>,
 <Gene b2478 at 0x1148f1898>,
 <Gene b3729 at 0x114995898>,
 <Gene b0052 at 0x114af1898>,
 <Gene b2564 at 0x114af1860>,
 <Gene b2750 at 0x112bd19e8>,
 <Gene b0086 at 0x114bd9a90>,
 <Gene b2315 at 0x1148f1b00>,
 <Gene b1131 at 0x112bd1b70>,
 <Gene b0096 at 0x114bd9ba8>,
 <Gene b0088 at 0x114bd2518>,
 <Gene b2312 at 0x1149a9c50>,
 <Gene b3176 at 0x114af9d30>,
 <Gene b4177 at 0x112bd1d68>,
 <Gene b3967 at 0x1149a9da0>,
 <Gene b2585 at 0x114b3deb8>,
 <Gene s0001 at 0x112ba5ef0>,
 <Gene b0131 at 0x114865f28>,
 <Gene b1260 at 0x114bb9f28>,
 <Gene b4005 at 0x114b31f60>,
 <Gene b1261 at 0x114bb9f60>,
 <Gene b0025 at 0x114959f98>,
 <Gene b1210 at 0x1149a9fd0>,
 <Gene b3990 at 0x114bb20f0>,
 <Gene b0181 at 0x114bd20f0>,
 <Gene b0423 at 0x114bb2128>,
 <Gene b3857 at 0x11487a160>,
 <Gene b3805 at 0x1149f2160>,
 <Gene b3992 at 0x114bb2160>,
 <Gene b4407 at 0x114bb2198>,
 <Gene b1096 at 0x112bca1d0>,
 <Gene b0776 at 0x112bfe1d0>,
 <Gene b3642 at 0x114ae2208>,
 <Gene b3189 at 0x114bd2208>,
 <Gene b2323 at 0x112b8e240>,
 <Gene b4214 at 0x11487a2b0>,
 <Gene b0133 at 0x114aea2e8>,
 <Gene b2103 at 0x1149f22e8>,
 <Gene b3360 at 0x112bca320>,
 <Gene b0414 at 0x114856320>,
 <Gene b1812 at 0x112bca358>,
 <Gene b0004 at 0x112b96400>,
 <Gene b0090 at 0x114bd2400>,
 <Gene b2615 at 0x114a9a438>,
 <Gene b3256 at 0x112bae4e0>,
 <Gene b2764 at 0x11493a4e0>,
 <Gene b0185 at 0x112bae518>,
 <Gene b2763 at 0x11493a518>,
 <Gene b3255 at 0x112bae550>,
 <Gene b2316 at 0x112bae588>,
 <Gene b3196 at 0x114882630>,
 <Gene b0091 at 0x114bd2630>,
 <Gene b0103 at 0x1149066a0>,
 <Gene b0775 at 0x11487a710>,
 <Gene b3648 at 0x1148ea710>,
 <Gene b3972 at 0x114bd2710>,
 <Gene b0142 at 0x1149f2780>,
 <Gene b0386 at 0x114ae27b8>,
 <Gene b0369 at 0x114b2a7f0>,
 <Gene b0720 at 0x1148be860>,
 <Gene b3774 at 0x114906908>,
 <Gene b0918 at 0x114a16940>,
 <Gene b0174 at 0x114bd29b0>,
 <Gene b3198 at 0x114a16a58>,
 <Gene b1091 at 0x112bbea58>,
 <Gene b3187 at 0x114ad6a90>,
 <Gene b3639 at 0x114b2ab00>,
 <Gene b3957 at 0x112bbeb38>,
 <Gene b1215 at 0x114a16b70>,
 <Gene b2838 at 0x1148deba8>,
 <Gene b0159 at 0x112b96c50>,
 <Gene b3771 at 0x1148eacc0>,
 <Gene b3809 at 0x1148decf8>,
 <Gene b2752 at 0x114b72cf8>,
 <Gene b2751 at 0x114b72d30>,
 <Gene b3201 at 0x112bbeda0>,
 <Gene b4262 at 0x112bbedd8>,
 <Gene b2827 at 0x114bb2dd8>,
 <Gene b3200 at 0x112bbee10>,
 <Gene b3199 at 0x112bbee48>,
 <Gene b0907 at 0x114ad6e48>,
 <Gene b4261 at 0x112bbee80>,
 <Gene b0003 at 0x1149f2e80>,
 <Gene b0087 at 0x114aeaeb8>,
 <Gene b0175 at 0x1148def60>,
 <Gene b4013 at 0x1149f2f98>,
 <Gene b3058 at 0x1148f7048>,
 <Gene b3959 at 0x112bb30b8>,
 <Gene b2499 at 0x114b370f0>,
 <Gene b2507 at 0x1149c7160>,
 <Gene b1740 at 0x114a9f198>,
 <Gene b2818 at 0x112bb31d0>,
 <Gene b2780 at 0x1148c71d0>,
 <Gene b2026 at 0x114b37278>,
 <Gene b3958 at 0x112bdf2b0>,
 <Gene b0109 at 0x114aaf320>,
 <Gene b3359 at 0x112bc3358>,
 <Gene b3730 at 0x11496f358>,
 <Gene b0180 at 0x112b7f3c8>,
 <Gene b2747 at 0x114a6b3c8>,
 <Gene b0421 at 0x1148ff400>,
 <Gene b2476 at 0x114b37400>,
 <Gene b1662 at 0x114b5b400>,
 <Gene b3608 at 0x114977470>,
 <Gene b2023 at 0x114a074e0>,
 <Gene b1062 at 0x1148f74e0>,
 <Gene b0029 at 0x1148ff4e0>,
 <Gene b2025 at 0x114a07518>,
 <Gene b2942 at 0x114a6b518>,
 <Gene b0415 at 0x114b5b4e0>,
 <Gene b3960 at 0x11485f588>,
 <Gene b3041 at 0x1148e3588>,
 <Gene b2557 at 0x114b375f8>,
 <Gene b3172 at 0x11485f6a0>,
 <Gene b1262 at 0x114a076a0>,
 <Gene b0134 at 0x114a8b6a0>,
 <Gene b0783 at 0x1148b76d8>,
 <Gene b0778 at 0x1148e36d8>,
 <Gene b2024 at 0x114b376a0>,
 <Gene b0781 at 0x1148b7710>,
 <Gene b2020 at 0x1149eb710>,
 <Gene b3804 at 0x114bdf710>,
 <Gene b4006 at 0x112bdf748>,
 <Gene b3177 at 0x1148f7780>,
 <Gene b3770 at 0x114a07780>,
 <Gene b0522 at 0x112bdf828>,
 <Gene b0009 at 0x114a8b828>,
 <Gene b3997 at 0x114bdf828>,
 <Gene b3412 at 0x114b23860>,
 <Gene b0523 at 0x112bdf908>,
 <Gene b0154 at 0x11496f908>,
 <Gene b2022 at 0x1149eb940>,
 <Gene b3974 at 0x114b23a90>,
 <Gene b1069 at 0x114a8bba8>,
 <Gene b0785 at 0x114a8bbe0>,
 <Gene b3389 at 0x1148f7c50>,
 <Gene b0073 at 0x114a0fc50>,
 <Gene b3018 at 0x112bd7c88>,
 <Gene b0914 at 0x1148afc88>,
 <Gene b1693 at 0x1148f7d30>,
 <Gene b2746 at 0x114a63d30>,
 <Gene b2687 at 0x114b5bd30>,
 <Gene b0826 at 0x114a8bd68>,
 <Gene b2515 at 0x114a63da0>,
 <Gene b0072 at 0x114a0fe10>,
 <Gene b0071 at 0x114a0fe48>,
 <Gene b3433 at 0x11485fef0>,
 <Gene b0074 at 0x114a0ffd0>]