cameo
Installation
Setting up a virtual environment first
Non-python dependencies
GLPK
CPLEX
Normal installation
Development setup
Getting started with
Step 1: Load a model
Step 2: Simulate a model
Step 3: Exploring a model
Simulating models with
Primer: Constraint-Based Modeling
Flux Balance Analysis
Parsimonious Flux Balance Analysis
Setp 2: Simulate knockouts phenotypes
Analyzing models with
Flux Variability Analysis
Phenotpic Phase Plane
Differential flux variability analysis
E. coli model and succinate production
E. coli core model
iJO1366 model
Parallelization
cameo vs. cobrapy
Importing a model
Solving models
How to ...
API
cameo package
Subpackages
cameo.api package
cameo.core package
cameo.data package
cameo.flux_analysis package
cameo.models package
cameo.network_analysis package
cameo.strain_design package
cameo.ui package
cameo.visualization package
Submodules
cameo.config module
cameo.exceptions module
cameo.io module
cameo.parallel module
cameo.stuff module
cameo.util module
Module contents
cameo
Docs
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API
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cameo package
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cameo.strain_design package
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cameo.strain_design.deterministic package
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cameo.strain_design.deterministic package
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Submodules
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cameo.strain_design.deterministic.flux_variability_based module
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Module contents
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v: 0.4.6
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0.4.6
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